Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013576 Camellia sinensis var. sinensis HOM05D006764 ORTHO05D008516 2.4e-187 658.7 333 100.0
Actinidia39013 Actinidia chinensis HOM05D006764 ORTHO05D008516 9.9e-149 530.4 333 82.0
Dinv01845 Davidia involucrata HOM05D006764 ORTHO05D008516 1.3e-140 503.4 334 76.3
Rhsim11G0125600 Rhododendron simsii HOM05D006764 ORTHO05D008516 2.7e-138 495.7 333 77.2
Potri.004G222300 Populus trichocarpa HOM05D006764 ORTHO05D008516 3.0e-129 465.7 340 70.0
GSVIVG01023281001 Vitis vinifera HOM05D006764 ORTHO05D008516 4.0e-126 455.3 331 71.9
HanXRQChr10g0294521 Helianthus annuus HOM05D006764 ORTHO05D008516 1.0e-124 450.7 330 68.2
Manes.07G022500 Manihot esculenta HOM05D006764 ORTHO05D008516 1.7e-124 449.9 330 67.3
Prupe.1G576600 Prunus persica HOM05D006764 ORTHO05D008516 2.2e-124 449.5 330 68.2
Atru.chr6.751 Acer truncatum HOM05D006764 ORTHO05D008516 2.9e-124 449.1 330 68.8
ECA234G3405 Erigeron canadensis HOM05D006764 ORTHO05D008516 6.5e-124 448.0 336 66.1
Cc02_g22970 Coffea canephora HOM05D006764 ORTHO05D008516 1.1e-123 447.2 318 71.4
TAR628G0031 Trochodendron aralioides HOM05D006764 ORTHO05D008516 1.9e-123 446.4 325 68.6
MD08G1240100 Malus domestica HOM05D006764 ORTHO05D008516 3.2e-123 445.7 336 66.7
MD15G1432200 Malus domestica HOM05D006764 ORTHO05D008516 9.3e-123 444.1 323 68.4
QL02p099872 Quercus lobata HOM05D006764 ORTHO05D008516 1.6e-122 443.4 329 67.5
CiPaw.05G051400 Carya illinoinensis HOM05D006764 ORTHO05D008516 6.7e-121 438.0 329 68.1
Sopen10g013910 Solanum pennellii HOM05D006764 ORTHO05D008516 6.7e-121 438.0 336 67.0
Solyc10g044910.2 Solanum lycopersicum HOM05D006764 ORTHO05D008516 5.7e-120 434.9 336 66.7
Medtr2g006100 Medicago truncatula HOM05D006764 ORTHO05D008516 2.6e-117 426.0 323 64.7
Sabra01G0168400 Salix brachista HOM05D006764 ORTHO05D008516 2.6e-117 426.0 340 67.4
Lj6g0021331 Lotus japonicus HOM05D006764 ORTHO05D008516 4.5e-117 425.2 320 67.5
PGR042G2798 Punica granatum HOM05D006764 ORTHO05D008516 4.5e-117 425.2 319 67.1
Thecc.02G025400 Theobroma cacao HOM05D006764 ORTHO05D008516 1.0e-116 424.1 335 64.2
EL10Ac6g14065 Beta vulgaris HOM05D006764 ORTHO05D008516 2.2e-116 422.9 321 65.7
Sc16g0001680 Simmondsia chinensis HOM05D006764 ORTHO05D008516 3.8e-116 422.2 330 64.2
Ciclev10001742m.g Citrus clementina HOM05D006764 ORTHO05D008516 6.5e-116 421.4 332 65.4
Psat1g221840 Pisum sativum HOM05D006764 ORTHO05D008516 6.5e-116 421.4 331 63.1
Phvul.006G217900 Phaseolus vulgaris HOM05D006764 ORTHO05D008516 1.9e-115 419.9 320 64.1
RcHm_v2.0_Chr7g0220831 Rosa chinensis HOM05D006764 ORTHO05D008516 1.9e-115 419.9 329 64.1
VMungo0540G1274 Vigna mungo HOM05D006764 ORTHO05D008516 9.4e-115 417.5 323 64.4
Glyma.12G168200 Glycine max HOM05D006764 ORTHO05D008516 3.6e-114 415.6 323 64.4
ClCG11G013370 Citrullus lanatus HOM05D006764 ORTHO05D008516 7.9e-114 414.5 332 64.2
Gorai.012G166600 Gossypium raimondii HOM05D006764 ORTHO05D008516 1.0e-113 414.1 329 62.6
vmacro01728 Vaccinium macrocarpon HOM05D006764 ORTHO05D008516 1.0e-113 414.1 276 77.2
Glyma.16G004200 Glycine max HOM05D006764 ORTHO05D008516 1.8e-113 413.3 323 63.8
THA.LOC104807147 Tarenaya hassleriana HOM05D006764 ORTHO05D008516 1.8e-113 413.3 328 64.9
FvH4_5g28680 Fragaria vesca HOM05D006764 ORTHO05D008516 3.9e-113 412.1 330 63.9
TPR.G2075 Trifolium pratense HOM05D006764 ORTHO05D008516 3.9e-113 412.1 322 63.7
Eucgr.G00355 Eucalyptus grandis HOM05D006764 ORTHO05D008516 5.1e-113 411.8 325 63.4
MELO3C011834.2 Cucumis melo HOM05D006764 ORTHO05D008516 8.8e-113 411.0 332 64.2
Gohir.D04G175300 Gossypium hirsutum HOM05D006764 ORTHO05D008516 2.5e-112 409.5 329 62.0
Gohir.A04G130100 Gossypium hirsutum HOM05D006764 ORTHO05D008516 5.7e-112 408.3 329 60.8
CsaV3_5G029880 Cucumis sativus L. HOM05D006764 ORTHO05D008516 4.8e-111 405.2 326 64.1
CANSAT54G1059 Cannabis sativa HOM05D006764 ORTHO05D008516 8.2e-111 404.4 324 62.0
arahy.Tifrunner.gnm1.ann1.FMX4TW Arachis hypogaea HOM05D006764 ORTHO05D008516 3.1e-110 402.5 325 62.5
arahy.Tifrunner.gnm1.ann1.0E87YT Arachis hypogaea HOM05D006764 ORTHO05D008516 1.2e-109 400.6 325 62.2
AT4G06676 Arabidopsis thaliana HOM05D006764 ORTHO05D008516 1.5e-109 400.2 317 66.6
AL6G41260 Arabidopsis lyrata HOM05D006764 ORTHO05D008516 4.5e-109 398.7 322 65.5
CARHR260060 Cardamine hirsuta HOM05D006764 ORTHO05D008516 1.4e-107 393.7 315 66.0
Nn5g27693 Nelumbo nucifera HOM05D006764 ORTHO05D008516 3.2e-107 392.5 309 65.4
PSO170G2545 Papaver somniferum HOM05D006764 ORTHO05D008516 4.2e-107 392.1 322 60.6
SGA_v2.0_scaffold304G47898 Striga asiatica HOM05D006764 ORTHO05D008516 5.5e-107 391.7 273 71.1
Migut.B00802 Erythranthe guttata HOM05D006764 ORTHO05D008516 7.2e-107 391.3 322 64.3
Nitab4.5_0000667g0120 Nicotiana tabacum HOM05D006764 ORTHO05D008516 2.1e-106 389.8 326 64.4
BcaB01g01263 Brassica carinata HOM05D006764 ORTHO05D008516 1.8e-105 386.7 315 64.8
Aqoxy6G00131 Aquilegia oxysepala HOM05D006764 ORTHO05D008516 2.3e-105 386.3 317 59.0
unitig_748.g8283 Utricularia gibba HOM05D006764 ORTHO05D008516 1.1e-104 384.0 317 61.5
Oeu023412.2 Olea europaea HOM05D006764 ORTHO05D008516 7.4e-104 381.3 277 70.4
Carub.0006s2639 Capsella rubella HOM05D006764 ORTHO05D008516 6.3e-103 378.3 322 62.7
HPP92_009268 Vanilla planifolia HOM05D006764 ORTHO05D008516 1.1e-102 377.5 325 58.5
TWI59G0639 Tripterygium wilfordii HOM05D006764 ORTHO05D008516 1.8e-102 376.7 327 60.9
BcaC04g20869 Brassica carinata HOM05D006764 ORTHO05D008516 5.3e-102 375.2 315 63.2
BraA09t38619Z Brassica rapa HOM05D006764 ORTHO05D008516 2.0e-101 373.2 316 63.0
Lalb_Chr18g0061021 Lupinus albus HOM05D006764 ORTHO05D008516 2.0e-101 373.2 319 59.2
CAN.G1108.5 Capsicum annuum HOM05D006764 ORTHO05D008516 2.2e-100 369.8 285 66.3
AUR62042713 Chenopodium quinoa HOM05D006764 ORTHO05D008516 4.2e-99 365.5 327 56.3
Thhalv10028801m.g Eutrema salsugineum HOM05D006764 ORTHO05D008516 1.5e-96 357.1 315 61.3
MBI17_g21477_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 1.7e-95 353.6 298 59.1
Peaxi162Scf00002g00261 Petunia axillaris HOM05D006764 ORTHO05D008516 8.2e-95 351.3 328 58.8
A09p30490 Brassica napus HOM05D006764 ORTHO05D008516 2.4e-94 349.7 331 58.3
COL.COLO4_17757 Corchorus olitorius HOM05D006764 ORTHO05D008516 4.5e-93 345.5 329 60.2
Aa31LG3G14080 Aethionema arabicum HOM05D006764 ORTHO05D008516 8.5e-92 341.3 339 56.3
Sp6g10710 Schrenkiella parvula HOM05D006764 ORTHO05D008516 7.7e-85 318.2 313 57.5
FAN13G1303 Fragaria x ananassa HOM05D006764 ORTHO05D008516 6.5e-84 315.1 295 58.0
Zm00001eb082660 Zea mays HOM05D006764 ORTHO05D008516 9.4e-83 311.2 320 50.9
Nitab4.5_0008098g0020 Nicotiana tabacum HOM05D006764 ORTHO05D008516 6.1e-82 308.5 338 54.4
ATR0709G017 Amborella trichopoda HOM05D006764 ORTHO05D008516 1.0e-81 307.8 331 49.5
Lsat_1_v5_gn_5_103781 Lactuca sativa HOM05D006764 ORTHO05D008516 6.8e-81 305.1 228 66.7
BolC9t56687H Brassica oleracea HOM05D006764 ORTHO05D008516 1.5e-80 303.9 250 62.8
Duzib132G0537 Durio zibethinus HOM05D006764 ORTHO05D008516 1.5e-80 303.9 303 54.8
FAN18G3575 Fragaria x ananassa HOM05D006764 ORTHO05D008516 7.5e-80 301.6 275 59.3
FAN08G1175 Fragaria x ananassa HOM05D006764 ORTHO05D008516 6.3e-79 298.5 287 57.5
C09p38380 Brassica napus HOM05D006764 ORTHO05D008516 1.6e-77 293.9 258 60.5
SEGI_07291 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 5.9e-77 292.0 315 50.8
Haze_01822 Corylus avellana HOM05D006764 ORTHO05D008516 5.5e-75 285.4 349 49.0
AUR62014213 Chenopodium quinoa HOM05D006764 ORTHO05D008516 2.1e-74 283.5 322 50.0
SalBow7G3863 Salvia bowleyana HOM05D006764 ORTHO05D008516 6.1e-74 282.0 211 65.9
SHI04828 Sapria himalayana HOM05D006764 ORTHO05D008516 7.5e-72 275.0 255 58.4
Ca_00050_v3 Cicer arietinum L. HOM05D006764 ORTHO05D008516 1.7e-71 273.9 241 58.9
PSO017G2259 Papaver somniferum HOM05D006764 ORTHO05D008516 4.5e-69 265.8 220 60.0
DCAR_029270 Daucus carota HOM05D006764 ORTHO05D008516 5.9e-69 265.4 329 49.8
Sed0008550 Sechium edule HOM05D000755 ORTHO05D000642 2.3e-68 263.5 270 55.2
Pp3c15_15530 Physcomitrium patens HOM05D006764 ORTHO05D008516 1.0e-65 254.6 314 42.4
Cpa.g.sc30.47 Carica papaya HOM05D006764 ORTHO05D008516 1.2e-64 251.1 158 77.8
Mapoly0025s0102 Marchantia polymorpha HOM05D006764 ORTHO05D008516 1.3e-63 247.7 316 42.4
SMO367G0572 Selaginella moellendorffii HOM05D006764 ORTHO05D008516 1.9e-62 243.8 300 46.7
AagrBONN_evm.TU.Sc2ySwM_228.3284 Anthoceros agrestis HOM05D006764 ORTHO05D008516 2.3e-44 183.7 214 46.3
SEGI_28644 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 7.3e-43 178.7 156 57.1
Lj5A261T39 Lonicera japonica HOM05D006764 ORTHO05D008516 4.7e-42 176.0 247 49.0
Hund12938 Selenicereus undatus HOM05D006764 ORTHO05D008516 3.4e-40 169.9 379 33.8
Cfa005482 Carpinus fangiana HOM05D006764 ORTHO05D008516 6.4e-39 165.6 122 68.9
FAN04G0462 Fragaria x ananassa HOM05D006764 ORTHO05D008516 6.6e-36 155.6 84 84.5
Cre01.g032350 Chlamydomonas reinhardtii HOM05D006764 ORTHO05D008516 2.5e-35 153.7 313 33.5
CBR_g19125 Chara braunii HOM05D006764 ORTHO05D008516 8.4e-31 138.7 188 40.4
Os04g0433200 Oryza sativa ssp. japonica HOM05D006764 ORTHO05D008516 8.4e-31 138.7 125 54.4
Hund29476 Selenicereus undatus HOM05D006764 ORTHO05D008516 2.1e-26 124.0 116 52.6
Hund29477 Selenicereus undatus HOM05D006764 ORTHO05D008516 2.1e-26 124.0 116 52.6
MCO04G067 Micromonas commoda HOM05D006764 ORTHO05D008516 1.2e-24 118.2 310 28.4
Nn6g34108 Nelumbo nucifera HOM05D006764 ORTHO05D008516 3.8e-15 86.7 92 48.9
Nn3g16387 Nelumbo nucifera HOM05D006764 ORTHO05D008516 4.6e-13 79.7 69 53.6
vmacro01729 Vaccinium macrocarpon HOM05D006764 ORTHO05D008516 2.8e-10 70.5 39 84.6
Nn1g06486 Nelumbo nucifera HOM05D027421 ORTHO05D008516 6.9e-09 65.9 75 41.3
VMungo1309G2004 Vigna mungo HOM05D006764 ORTHO05D008516 1.2e-08 65.1 58 50.0
MBI17_g13541_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 1.0e-07 62.0 48 64.6
Cc00_g10410 Coffea canephora HOM05D006764 ORTHO05D008516 2.9e-07 60.5 56 58.9
Nn1g00311 Nelumbo nucifera HOM05D006764 ORTHO05D008516 5.0e-07 59.7 72 47.2


User provided reference genes

Program Settings