Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.5e-56 222.6 116 100.0
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 4.7e-21 104.8 124 52.4
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 7.5e-19 97.4 126 50.0
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 8.3e-18 94.0 129 52.7
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.3e-17 91.3 119 50.4
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 5.3e-17 91.3 119 50.4
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.6e-16 89.7 135 48.1
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 2.7e-16 89.0 127 48.8
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 5.9e-16 87.8 128 48.4
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 5.9e-16 87.8 128 48.4
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 7.7e-16 87.4 138 46.4
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 8.5e-15 84.0 119 47.9
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.1e-14 83.6 119 47.1
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 1.5e-14 83.2 121 45.5
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 1.5e-14 83.2 121 45.5
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 7.2e-14 80.9 122 47.5
Sed0024469 Sechium edule HOM05D004793 ORTHO05D004423 3.6e-13 78.6 113 45.1
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.0e-12 77.0 115 49.6
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.4e-12 76.6 126 44.4
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 6.8e-12 74.3 111 47.7
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 6.8e-12 74.3 127 42.5
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 1.2e-11 73.6 115 46.1
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 1.5e-11 73.2 127 43.3
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 2.0e-11 72.8 124 46.8
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 2.0e-11 72.8 113 44.2
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 2.0e-11 72.8 140 46.4
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.6e-11 72.4 128 46.1
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 4.4e-11 71.6 140 45.7
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 5.7e-11 71.2 127 41.7
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.5e-11 70.9 129 45.0
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 9.8e-11 70.5 125 47.2
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 9.8e-11 70.5 128 50.0
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 8.3e-10 67.4 127 43.3
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.4e-09 66.6 138 41.3
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.4e-09 66.6 127 44.1
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 1.8e-09 66.2 123 45.5
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.4e-09 65.9 129 42.6
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.4e-09 65.9 112 42.0
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 2.4e-09 65.9 127 43.3
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 3.1e-09 65.5 140 38.6
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 5.4e-09 64.7 139 38.8
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.0e-09 64.3 144 42.4
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 9.1e-09 63.9 134 43.3
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.2e-08 63.5 128 43.0
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.6e-08 63.2 123 40.7
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 2.0e-08 62.8 139 41.7
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.7e-08 62.4 133 43.6
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.5e-08 61.6 121 38.8
Gorai.002G096900 Gossypium raimondii HOM05D004793 ORTHO05D004423 5.9e-08 61.2 93 44.1
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 7.7e-08 60.8 134 41.0
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 1.0e-07 60.5 117 41.9
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 1.0e-07 60.5 121 38.0
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.0e-07 60.5 121 38.0
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.3e-07 60.1 128 36.7
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.3e-07 60.1 121 38.0
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.3e-07 60.1 121 38.0
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.3e-07 60.1 121 38.0
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 1.7e-07 59.7 135 41.5
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.7e-07 59.7 157 36.9
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 2.9e-07 58.9 128 36.7
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 2.9e-07 58.9 124 37.9
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.9e-07 58.9 101 43.6
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 2.9e-07 58.9 125 42.4
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 3.8e-07 58.5 142 38.7
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 3.8e-07 58.5 139 37.4
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 5.0e-07 58.2 143 37.8
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 5.0e-07 58.2 122 36.9
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 8.6e-07 57.4 122 39.3
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 8.6e-07 57.4 130 37.7
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 8.6e-07 57.4 117 37.6
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 8.6e-07 57.4 127 35.4
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.1e-06 57.0 123 43.9
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 1.1e-06 57.0 137 35.8
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.9e-06 56.2 128 40.6
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 1.9e-06 56.2 130 36.9
PGSC0003DMG400008468 Solanum tuberosum HOM05D018828 ORTHO05D004423 1.9e-06 56.2 123 40.7
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 3.3e-06 55.5 129 34.1
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 3.3e-06 55.5 155 34.8
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 4.2e-06 55.1 128 39.8
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.2e-06 54.3 128 39.8
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 7.2e-06 54.3 128 39.8
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 7.2e-06 54.3 123 39.8
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 9.5e-06 53.9 137 36.5
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 9.5e-06 53.9 142 35.9
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 9.5e-06 53.9 147 36.1


User provided reference genes

Program Settings