Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.2e-37 159.5 85 100.0
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.2e-37 159.5 85 100.0
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 3.9e-25 117.9 85 70.6
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 2.5e-24 115.2 88 63.6
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 3.3e-24 114.8 86 70.9
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 6.2e-23 110.5 85 64.7
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.1e-22 109.8 86 64.0
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.8e-22 109.0 86 66.3
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 2.4e-22 108.6 85 64.7
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 6.9e-22 107.1 85 67.1
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 9.0e-22 106.7 85 64.7
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 9.0e-22 106.7 85 61.2
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.2e-21 106.3 85 64.7
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.5e-21 105.9 85 64.7
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.5e-21 105.9 85 64.7
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.0e-21 105.5 86 66.3
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.5e-21 104.4 85 63.5
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 5.8e-21 104.0 86 64.0
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 7.6e-21 103.6 84 65.5
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.3e-20 102.8 82 61.0
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.2e-20 102.1 86 62.8
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 3.8e-20 101.3 85 58.8
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 3.8e-20 101.3 86 62.8
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 8.4e-20 100.1 83 61.4
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 1.1e-19 99.8 76 65.8
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.9e-19 99.0 86 64.0
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 1.9e-19 99.0 76 65.8
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.1e-18 95.5 85 58.8
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 2.1e-18 95.5 78 61.5
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 3.5e-18 94.7 84 56.0
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.5e-18 94.7 85 61.2
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 1.0e-17 93.2 78 62.8
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.0e-17 93.2 83 57.8
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 1.0e-17 93.2 83 57.8
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.8e-17 92.4 86 59.3
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.8e-17 92.4 85 55.3
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 3.0e-17 91.7 73 65.8
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 3.0e-17 91.7 83 57.8
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 3.0e-17 91.7 81 56.8
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.9e-17 91.3 86 58.1
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 8.7e-17 90.1 87 52.9
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 8.7e-17 90.1 86 58.1
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.5e-16 89.4 86 58.1
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 1.5e-16 89.4 86 57.0
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.9e-16 89.0 91 53.8
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.5e-16 88.6 89 51.7
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 2.5e-16 88.6 83 55.4
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.3e-16 87.8 86 57.0
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 4.3e-16 87.8 89 53.9
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 7.4e-16 87.0 85 57.6
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 7.4e-16 87.0 84 52.4
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 9.7e-16 86.7 83 51.8
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 9.7e-16 86.7 82 58.5
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 1.6e-15 85.9 92 54.3
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 2.2e-15 85.5 86 55.8
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 2.8e-15 85.1 80 56.2
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 2.8e-15 85.1 88 55.7
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.8e-15 85.1 83 54.2
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 2.8e-15 85.1 81 55.6
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 3.7e-15 84.7 81 55.6
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 4.8e-15 84.3 77 53.2
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 6.3e-15 84.0 85 55.3
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 8.2e-15 83.6 85 51.8
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 1.4e-14 82.8 80 55.0
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.4e-14 82.8 73 60.3
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.4e-14 82.0 83 55.4
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.4e-14 82.0 83 56.6
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 2.4e-14 82.0 84 54.8
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 3.1e-14 81.6 80 55.0
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 3.1e-14 81.6 79 54.4
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 4.1e-14 81.3 86 54.7
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 4.1e-14 81.3 81 54.3
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 5.3e-14 80.9 82 48.8
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.3e-14 80.9 85 55.3
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 5.3e-14 80.9 72 55.6
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 6.9e-14 80.5 86 51.2
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 9.0e-14 80.1 81 56.8
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 9.0e-14 80.1 88 51.1
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.2e-13 79.7 76 52.6
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.5e-13 79.3 85 55.3
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.0e-13 79.0 86 53.5
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 2.0e-13 79.0 80 55.0
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 2.0e-13 79.0 76 55.3
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 2.6e-13 78.6 91 58.2
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 2.6e-13 78.6 85 50.6
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 3.4e-13 78.2 85 45.9
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 5.9e-13 77.4 75 54.7
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.9e-13 77.4 84 53.6
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 1.0e-12 76.6 85 49.4
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 1.0e-12 76.6 80 52.5
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 1.3e-12 76.3 85 51.8
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 1.3e-12 76.3 83 44.6
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 1.3e-12 76.3 72 54.2
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.7e-12 75.9 83 49.4
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 2.2e-12 75.5 83 44.6
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 2.2e-12 75.5 82 48.8
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 2.2e-12 75.5 88 48.9
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 2.9e-12 75.1 60 61.7
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 2.9e-12 75.1 78 46.2
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 2.9e-12 75.1 83 49.4
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 5.0e-12 74.3 80 51.2
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 6.5e-12 73.9 74 55.4
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 8.5e-12 73.6 88 50.0
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 8.5e-12 73.6 82 51.2
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.1e-11 73.2 77 58.4
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 1.4e-11 72.8 80 48.8
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 1.4e-11 72.8 81 49.4
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.4e-11 72.8 75 53.3
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 1.9e-11 72.4 79 51.9
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 3.2e-11 71.6 77 48.1
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 4.2e-11 71.2 85 42.4
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 5.5e-11 70.9 75 53.3
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 5.5e-11 70.9 88 45.5
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 5.5e-11 70.9 83 43.4
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 7.2e-11 70.5 84 42.9
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 7.2e-11 70.5 82 53.7
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 7.2e-11 70.5 76 52.6
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 9.4e-11 70.1 76 48.7
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 9.4e-11 70.1 85 45.9
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 9.4e-11 70.1 85 45.9
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.2e-10 69.7 86 51.2
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.2e-10 69.7 77 51.9
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.6e-10 69.3 77 57.1
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 1.6e-10 69.3 80 60.0
Peaxi162Scf00017g00254 Petunia axillaris HOM05D003533 ORTHO05D004009 2.1e-10 68.9 65 58.5
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.1e-10 68.9 85 42.4
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 2.7e-10 68.6 82 52.4
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 2.7e-10 68.6 85 51.8
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 2.7e-10 68.6 80 52.5
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 3.6e-10 68.2 84 42.9
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 3.6e-10 68.2 84 42.9
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 3.6e-10 68.2 74 50.0
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 3.6e-10 68.2 75 52.0
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 3.6e-10 68.2 75 52.0
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 6.1e-10 67.4 78 46.2
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 6.1e-10 67.4 78 46.2
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 6.1e-10 67.4 78 50.0
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.0e-09 66.6 78 46.2
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.4e-09 66.2 58 62.1
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.8e-09 65.9 76 46.1
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.8e-09 65.9 90 42.2
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 2.3e-09 65.5 85 44.7
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 2.3e-09 65.5 85 44.7
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 3.0e-09 65.1 86 44.2
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 3.9e-09 64.7 73 45.2
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 3.9e-09 64.7 73 45.2
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 8.8e-09 63.5 91 42.9
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 8.8e-09 63.5 83 42.2
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 1.1e-08 63.2 65 49.2
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 2.5e-08 62.0 46 60.9
Haze_12125 Corylus avellana HOM05D003533 ORTHO05D004009 3.3e-08 61.6 82 42.7
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 3.3e-08 61.6 80 42.5
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 4.3e-08 61.2 86 41.9
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 5.7e-08 60.8 46 60.9
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 7.4e-08 60.5 65 55.4
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 9.7e-08 60.1 85 41.2
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 9.7e-08 60.1 77 44.2
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 1.7e-07 59.3 75 40.0
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 1.7e-07 59.3 72 41.7
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 1.7e-07 59.3 84 40.5
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 1.7e-07 59.3 84 40.5
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 1.7e-07 59.3 84 40.5
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 1.7e-07 59.3 84 40.5
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 2.8e-07 58.5 85 38.8
ClCG06G016690 Citrullus lanatus HOM05D003533 ORTHO05D004009 2.8e-07 58.5 61 50.8
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 2.8e-07 58.5 73 42.5
Prupe.1G261200 Prunus persica HOM05D003533 ORTHO05D004009 6.3e-07 57.4 87 44.8
Potri.012G075800 Populus trichocarpa HOM05D003533 ORTHO05D004009 8.2e-07 57.0 85 40.0
Rhsim08G0167600 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.8e-06 55.8 80 42.5
Sabra12G0053900 Salix brachista HOM05D003533 ORTHO05D004009 2.4e-06 55.5 85 41.2
Actinidia34960 Actinidia chinensis HOM05D003533 ORTHO05D004009 3.1e-06 55.1 54 53.7
Lsat_1_v5_gn_1_11180 Lactuca sativa HOM05D003533 ORTHO05D004009 4.1e-06 54.7 79 45.6
ATR0824G240 Amborella trichopoda HOM05D003533 ORTHO05D004009 9.1e-06 53.5 84 42.9


User provided reference genes

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