Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 6.9e-73 277.3 153 100.0
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 3.0e-60 235.3 126 87.3
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 6.7e-60 234.2 126 87.3
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 6.7e-60 234.2 127 85.0
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 1.5e-59 233.0 127 89.0
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 2.0e-59 232.6 151 87.4
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 1.7e-58 229.6 129 84.5
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 3.7e-58 228.4 128 84.4
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 4.8e-58 228.0 129 85.3
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 6.3e-58 227.6 124 86.3
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.1e-57 226.9 126 83.3
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 1.8e-57 226.1 123 86.2
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 2.4e-57 225.7 118 89.0
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 7.0e-57 224.2 123 85.4
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 9.1e-57 223.8 127 84.3
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 1.2e-56 223.4 121 87.6
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 1.6e-56 223.0 127 84.3
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 2.0e-56 222.6 123 84.6
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 2.0e-56 222.6 123 84.6
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 3.5e-56 221.9 126 84.9
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 4.5e-56 221.5 123 82.9
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 5.9e-56 221.1 123 83.7
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 7.7e-56 220.7 125 82.4
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 1.0e-55 220.3 129 81.4
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 1.0e-55 220.3 126 81.0
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 1.3e-55 219.9 122 83.6
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 1.3e-55 219.9 127 82.7
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 1.7e-55 219.5 123 82.1
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 2.2e-55 219.2 129 79.8
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 2.2e-55 219.2 129 79.8
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 5.0e-55 218.0 133 78.2
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 6.5e-55 217.6 127 81.1
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 1.1e-54 216.9 128 79.7
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 1.9e-54 216.1 153 77.1
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 5.5e-54 214.5 127 81.1
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 9.4e-54 213.8 128 80.5
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 1.6e-53 213.0 153 79.7
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 2.1e-53 212.6 129 78.3
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 2.7e-53 212.2 126 79.4
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 4.7e-53 211.5 151 76.2
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 1.0e-52 210.3 124 79.8
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.4e-52 209.9 151 75.5
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 1.8e-52 209.5 130 77.7
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 3.0e-52 208.8 127 78.7
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 3.0e-52 208.8 127 78.7
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 3.0e-52 208.8 127 78.7
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 2.6e-51 205.7 127 76.4
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 3.4e-51 205.3 109 89.0
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.4e-51 205.3 127 77.2
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 5.7e-51 204.5 123 80.5
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 9.8e-51 203.8 128 75.0
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 1.7e-50 203.0 120 77.5
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 1.7e-50 203.0 128 77.3
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 1.1e-49 200.3 154 73.4
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 4.1e-49 198.4 100 91.0
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 5.4e-49 198.0 119 75.6
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 7.0e-49 197.6 119 75.6
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 7.0e-49 197.6 119 75.6
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 1.6e-48 196.4 110 81.8
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 5.9e-48 194.5 129 70.5
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 5.9e-48 194.5 113 76.1
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 3.8e-47 191.8 170 59.4
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 5.0e-47 191.4 126 71.4
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 6.5e-47 191.0 126 69.8
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 8.5e-47 190.7 126 69.8
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 2.5e-46 189.1 125 73.6
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 9.4e-46 187.2 129 69.0
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 1.6e-45 186.4 121 72.7
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 2.7e-45 185.7 119 69.7
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 8.0e-45 184.1 128 69.5
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 3.0e-44 182.2 127 68.5
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 4.0e-44 181.8 126 67.5
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 1.2e-43 180.3 118 71.2
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 1.2e-43 180.3 129 67.4
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 1.2e-43 180.3 126 67.5
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 3.4e-43 178.7 167 55.1
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 3.4e-43 178.7 118 70.3
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 4.4e-43 178.3 127 67.7
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 4.4e-43 178.3 128 66.4
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 5.7e-43 177.9 120 68.3
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 7.5e-43 177.6 128 67.2
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 2.2e-42 176.0 102 78.4
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 2.2e-42 176.0 102 78.4
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 2.2e-42 176.0 133 64.7
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 2.8e-42 175.6 127 66.9
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 4.9e-42 174.9 133 64.7
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 6.3e-42 174.5 114 74.6
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 6.3e-42 174.5 114 74.6
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 6.3e-42 174.5 133 65.4
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 6.3e-42 174.5 109 77.1
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 8.3e-42 174.1 102 77.5
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 8.3e-42 174.1 117 70.1
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 8.3e-42 174.1 127 63.8
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 1.1e-41 173.7 131 64.9
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 1.1e-41 173.7 131 64.9
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 1.1e-41 173.7 131 64.9
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 1.1e-41 173.7 131 64.9
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 1.4e-41 173.3 118 66.9
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 1.8e-41 172.9 125 64.0
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 2.4e-41 172.6 102 76.5
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 2.4e-41 172.6 125 63.2
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 2.4e-41 172.6 127 64.6
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 3.1e-41 172.2 102 75.5
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 4.1e-41 171.8 125 64.0
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 5.4e-41 171.4 118 68.6
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 7.0e-41 171.0 126 65.9
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 9.2e-41 170.6 129 65.1
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 4.5e-40 168.3 120 65.0
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 2.9e-39 165.6 98 75.5
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 3.3e-38 162.2 119 65.5
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 3.6e-37 158.7 104 70.2
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 4.7e-37 158.3 125 60.8
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 1.8e-36 156.4 87 83.9
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 4.9e-34 148.3 122 62.3
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 1.8e-33 146.4 84 79.8
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 4.0e-28 128.6 78 73.1
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 1.5e-27 126.7 97 54.6
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 1.3e-26 123.6 101 54.5
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 2.4e-25 119.4 61 90.2
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 2.0e-24 116.3 101 50.5
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 6.0e-24 114.8 97 54.6
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 3.3e-22 109.0 61 80.3
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 3.6e-21 105.5 86 62.8
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 3.6e-21 105.5 61 78.7
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 6.2e-21 104.8 98 52.0
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 1.4e-20 103.6 65 72.3
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 4.0e-20 102.1 68 70.6
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 4.4e-19 98.6 61 73.8
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 1.3e-18 97.1 68 69.1
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 8.3e-18 94.4 67 70.1
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 9.2e-17 90.9 85 50.6
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 2.7e-16 89.4 57 71.9
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 1.2e-13 80.5 49 75.5
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 1.3e-10 70.5 48 62.5
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 1.3e-10 70.5 62 56.5
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 1.9e-09 66.6 110 29.1
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 4.6e-08 62.0 96 33.3
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 1.1e-06 57.4 34 70.6


User provided reference genes

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