Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 8.4e-114 413.7 206 100.0
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.0e-63 245.7 220 60.5
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 5.7e-62 241.5 220 60.9
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.3e-55 219.5 214 53.3
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 2.2e-53 213.0 220 57.3
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 2.8e-53 212.6 220 52.7
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 4.0e-47 192.2 221 51.1
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 9.7e-46 187.6 220 49.1
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 3.1e-44 182.6 222 48.6
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.4e-39 167.2 211 48.8
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 6.8e-39 164.9 178 50.6
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 2.4e-36 156.4 210 45.2
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 7.0e-36 154.8 212 44.8
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 1.1e-33 147.5 220 43.2
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 9.5e-33 144.4 217 42.4
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 1.0e-31 141.0 212 43.9
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 4.4e-30 135.6 220 40.0
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 5.4e-28 128.6 211 40.8
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 7.0e-28 128.3 226 38.9
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 1.2e-27 127.5 210 39.5
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 4.5e-27 125.6 220 36.8
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 4.5e-27 125.6 210 40.0
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 7.8e-27 124.8 212 38.2
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 1.7e-26 123.6 217 38.7
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 2.3e-26 123.2 215 38.1
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 8.6e-26 121.3 211 37.9
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 2.1e-24 116.7 222 38.3
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 2.8e-24 116.3 263 31.6
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 1.0e-23 114.4 259 35.5
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 3.0e-23 112.8 285 30.9
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 8.9e-23 111.3 164 40.2
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 1.2e-22 110.9 228 34.2
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 3.4e-22 109.4 226 35.4
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 3.4e-22 109.4 221 36.2
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 5.8e-22 108.6 248 34.3
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 5.8e-22 108.6 236 36.0
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 1.3e-21 107.5 199 36.2
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 2.2e-21 106.7 221 35.7
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 2.2e-21 106.7 210 37.6
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 3.7e-21 105.9 221 35.7
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 8.3e-21 104.8 222 38.7
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 8.3e-21 104.8 223 35.9
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.1e-20 104.4 176 36.4
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 1.4e-20 104.0 198 40.4
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.4e-20 104.0 221 35.3
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 1.8e-20 103.6 221 35.3
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 2.4e-20 103.2 254 32.7
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 7.0e-20 101.7 107 49.5
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 9.2e-20 101.3 181 37.0
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 9.2e-20 101.3 221 33.9
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.6e-19 100.5 203 34.5
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.7e-19 99.8 68 69.1
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.7e-19 99.8 219 35.6
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 4.6e-19 99.0 197 36.0
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.3e-18 97.4 206 36.4
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 1.3e-18 97.4 219 36.1
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 2.3e-18 96.7 198 35.4
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 3.0e-18 96.3 219 36.1
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 3.0e-18 96.3 139 41.7
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 3.0e-18 96.3 209 35.4
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 3.9e-18 95.9 167 40.1
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 5.0e-18 95.5 128 44.5
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 5.0e-18 95.5 222 32.4
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 5.0e-18 95.5 219 35.6
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 8.6e-18 94.7 127 44.9
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 1.5e-17 94.0 121 47.1
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 2.5e-17 93.2 254 31.9
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 3.3e-17 92.8 136 43.4
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 9.5e-17 91.3 211 34.1
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 1.2e-16 90.9 209 33.5
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 2.1e-16 90.1 148 40.5
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 6.2e-16 88.6 214 36.9
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 6.2e-16 88.6 118 44.9
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 6.2e-16 88.6 224 33.0
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 8.0e-16 88.2 204 35.3
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 1.4e-15 87.4 205 31.2
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 2.3e-15 86.7 214 35.0
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 3.1e-15 86.3 120 45.8
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 4.0e-15 85.9 142 37.3
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 4.0e-15 85.9 200 35.5
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 1.2e-14 84.3 159 39.6
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 1.2e-14 84.3 249 31.7
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 2.6e-14 83.2 193 37.3
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 3.4e-14 82.8 197 31.5
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 3.4e-14 82.8 205 34.1
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 9.8e-14 81.3 199 34.2
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 1.7e-13 80.5 88 48.9
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.7e-13 80.5 141 39.0
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 2.2e-13 80.1 112 40.2
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 2.2e-13 80.1 191 33.0
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 3.7e-13 79.3 62 62.9
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 6.4e-13 78.6 137 38.0
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 1.1e-12 77.8 151 35.1
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 2.4e-12 76.6 196 32.1
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 3.2e-12 76.3 204 32.4
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 3.2e-12 76.3 201 31.8
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 4.1e-12 75.9 132 33.3
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 5.4e-12 75.5 215 33.5
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 1.2e-11 74.3 183 32.2
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 3.5e-11 72.8 156 35.9
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 6.0e-11 72.0 195 30.8
Duzib268G0244 Durio zibethinus HOM05D002617 ORTHO05D006076 6.0e-11 72.0 141 37.6
Lsat_1_v5_gn_8_136421 Lactuca sativa HOM05D002617 ORTHO05D048373 1.7e-10 70.5 54 61.1
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 3.0e-10 69.7 198 32.3
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 3.9e-10 69.3 91 42.9
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 5.0e-10 68.9 82 42.7
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 5.0e-10 68.9 196 30.1
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 6.6e-10 68.6 149 32.9
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.1e-09 67.8 114 39.5
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 1.5e-09 67.4 149 32.2
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 3.3e-09 66.2 51 58.8
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 3.3e-09 66.2 131 32.1
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 4.3e-09 65.9 51 56.9
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 4.3e-09 65.9 141 34.8
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 5.6e-09 65.5 109 37.6
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 5.6e-09 65.5 109 37.6
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 5.6e-09 65.5 109 37.6
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 5.6e-09 65.5 145 32.4
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 7.3e-09 65.1 93 44.1
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 9.5e-09 64.7 68 47.1
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 9.5e-09 64.7 68 47.1
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 9.5e-09 64.7 131 32.8
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 1.2e-08 64.3 87 42.5
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 1.6e-08 63.9 43 67.4
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 2.1e-08 63.5 163 30.7
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 2.1e-08 63.5 51 56.9
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 2.8e-08 63.2 127 33.9
Actinidia19277 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.6e-08 62.8 159 30.2
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 8.1e-08 61.6 156 30.1
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 2.3e-07 60.1 210 31.0
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 2.3e-07 60.1 134 32.8
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 3.1e-07 59.7 177 27.1
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 8.9e-07 58.2 69 43.5
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.2e-06 57.8 51 51.0
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 2.6e-06 56.6 127 36.2
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 3.4e-06 56.2 51 49.0
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 9.9e-06 54.7 212 26.4


User provided reference genes

Program Settings