Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.4e-66 256.1 132 100.0
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 2.1e-57 225.7 154 81.2
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 5.0e-19 98.2 134 52.2
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.2e-17 93.6 144 47.9
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.4e-16 90.1 108 56.5
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 5.2e-16 88.2 150 48.0
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.1e-15 87.0 145 48.3
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 2.6e-15 85.9 141 48.9
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 8.2e-14 80.9 129 48.8
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 1.8e-13 79.7 127 49.6
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 1.8e-13 79.7 132 46.2
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.2e-12 77.0 131 48.1
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.0e-12 76.3 111 53.2
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 4.5e-12 75.1 149 42.3
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 5.9e-12 74.7 130 43.8
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 7.7e-12 74.3 114 52.6
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 1.0e-11 73.9 136 44.1
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 1.0e-11 73.9 149 41.6
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 1.3e-11 73.6 141 44.7
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 1.3e-11 73.6 92 58.7
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 1.7e-11 73.2 132 44.7
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 1.7e-11 73.2 127 42.5
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 1.7e-11 73.2 140 42.9
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 2.2e-11 72.8 137 43.8
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 2.9e-11 72.4 134 44.8
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 5.0e-11 71.6 134 44.8
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.0e-11 71.6 124 43.5
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 5.0e-11 71.6 145 41.4
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 6.5e-11 71.2 142 42.3
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 6.5e-11 71.2 111 50.5
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 8.5e-11 70.9 134 43.3
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 8.5e-11 70.9 134 43.3
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.1e-10 70.5 131 45.8
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 1.1e-10 70.5 130 42.3
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.9e-10 69.7 119 42.9
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 1.9e-10 69.7 110 48.2
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 1.9e-10 69.7 143 44.1
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.9e-10 69.7 136 42.6
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 1.9e-10 69.7 136 42.6
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.9e-10 69.7 136 43.4
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 3.2e-10 68.9 151 41.1
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 5.5e-10 68.2 149 38.9
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 7.2e-10 67.8 117 41.0
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 7.2e-10 67.8 136 43.4
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 9.4e-10 67.4 142 43.7
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 1.2e-09 67.0 133 41.4
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 1.2e-09 67.0 116 45.7
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 1.6e-09 66.6 118 39.8
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 2.1e-09 66.2 135 43.0
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 2.7e-09 65.9 151 39.1
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 2.7e-09 65.9 158 39.9
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 3.6e-09 65.5 136 39.7
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 8.0e-09 64.3 120 42.5
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 8.0e-09 64.3 143 44.1
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.8e-08 63.2 101 44.6
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 2.3e-08 62.8 113 44.2
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 2.3e-08 62.8 110 44.5
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 3.0e-08 62.4 126 40.5
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 8.8e-08 60.8 110 44.5
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 1.2e-07 60.5 143 37.8
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 1.2e-07 60.5 126 43.7
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 1.2e-07 60.5 124 40.3
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 1.2e-07 60.5 129 38.8
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.5e-07 60.1 126 38.9
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 2.0e-07 59.7 98 43.9
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 2.6e-07 59.3 144 40.3
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 3.3e-07 58.9 117 40.2
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 4.4e-07 58.5 126 36.5
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 9.7e-07 57.4 134 33.6
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.3e-06 57.0 123 39.0
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 1.7e-06 56.6 132 39.4
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 2.8e-06 55.8 125 38.4
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 2.8e-06 55.8 125 41.6
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 2.8e-06 55.8 114 37.7
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 2.8e-06 55.8 122 37.7
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 2.8e-06 55.8 141 36.9
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 3.7e-06 55.5 133 34.6
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.7e-06 55.5 130 33.8
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 3.7e-06 55.5 107 39.3
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 4.8e-06 55.1 54 61.1
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 4.8e-06 55.1 133 37.6
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 6.3e-06 54.7 122 39.3
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 6.3e-06 54.7 95 45.3
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 6.3e-06 54.7 109 45.0
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 8.2e-06 54.3 145 35.9
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 8.2e-06 54.3 133 36.8


User provided reference genes

Program Settings