Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 9.0e-248 859.8 420 100.0
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 3.8e-230 801.2 420 92.1
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.1e-229 799.7 418 92.3
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 2.2e-225 785.4 418 90.0
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 2.0e-223 778.9 418 89.2
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 8.5e-222 773.5 437 86.5
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.3e-219 765.4 420 90.5
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 3.1e-216 755.0 419 86.6
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.8e-214 748.0 368 98.4
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 7.2e-213 743.8 420 85.0
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 4.7e-212 741.1 420 85.2
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 4.7e-212 741.1 420 85.0
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 5.2e-211 737.6 420 84.5
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 8.8e-211 736.9 419 84.5
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.2e-209 732.3 420 83.8
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.8e-209 731.9 417 84.7
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 8.2e-209 730.3 420 82.4
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.4e-208 729.6 437 81.7
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.8e-208 729.2 412 84.5
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.8e-208 729.2 419 83.1
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.1e-208 728.4 417 83.0
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 5.3e-208 727.6 414 83.6
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 9.1e-208 726.9 414 82.9
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.2e-207 726.5 420 82.6
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.6e-207 726.1 414 83.3
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 3.5e-207 724.9 420 81.9
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 3.5e-207 724.9 420 82.4
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 5.9e-207 724.2 417 82.7
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.0e-206 723.4 420 82.1
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 2.9e-206 721.8 442 79.2
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 5.0e-206 721.1 414 82.6
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 6.5e-206 720.7 412 83.0
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 8.5e-206 720.3 420 81.0
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 8.5e-206 720.3 417 81.1
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 8.5e-206 720.3 416 80.8
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 8.5e-206 720.3 416 81.0
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.1e-205 719.9 417 82.7
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.9e-205 719.2 417 81.8
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.5e-205 718.8 420 80.7
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.5e-205 718.8 420 81.4
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 3.2e-205 718.4 416 80.8
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 5.5e-205 717.6 416 81.2
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 9.4e-205 716.8 419 82.1
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.1e-204 715.7 420 81.7
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.7e-204 715.3 419 81.4
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 2.7e-204 715.3 417 82.3
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 3.6e-204 714.9 417 81.3
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 3.6e-204 714.9 416 81.5
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 6.1e-204 714.1 412 82.8
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 8.0e-204 713.8 416 82.5
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.0e-203 713.4 416 80.3
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.4e-203 713.0 414 80.7
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.8e-203 712.6 411 81.5
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 3.0e-203 711.8 420 80.2
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 4.0e-203 711.4 416 81.0
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 4.0e-203 711.4 420 81.7
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 5.2e-203 711.1 416 79.8
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 6.7e-203 710.7 412 83.0
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 8.8e-203 710.3 432 79.9
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.5e-202 709.5 418 81.8
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 2.6e-202 708.8 417 81.8
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 2.6e-202 708.8 414 80.9
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 2.6e-202 708.8 417 81.3
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 4.4e-202 708.0 411 80.0
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 5.7e-202 707.6 417 81.3
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 7.5e-202 707.2 417 80.6
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 1.3e-201 706.4 417 81.3
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.3e-201 706.4 417 80.6
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.7e-201 706.1 437 78.7
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.7e-201 706.1 411 79.6
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 4.8e-201 704.5 416 79.1
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.8e-200 702.6 419 80.4
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.8e-200 702.6 414 81.4
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.8e-200 702.6 414 81.6
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 3.1e-200 701.8 420 80.7
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.1e-200 701.8 433 79.0
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 3.1e-200 701.8 457 75.1
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 3.1e-200 701.8 417 80.3
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.6e-199 699.5 417 78.9
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.7e-199 698.7 417 80.3
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.5e-199 698.0 433 78.8
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 7.7e-199 697.2 420 78.8
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 2.9e-198 695.3 416 78.6
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.9e-197 692.6 433 78.3
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.5e-197 691.0 420 77.1
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 7.2e-197 690.6 412 76.9
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.2e-196 689.9 416 78.6
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.6e-196 689.5 409 80.4
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.7e-196 688.7 416 76.7
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 3.6e-196 688.3 416 78.1
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 4.7e-196 688.0 416 78.1
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.8e-195 686.0 416 78.1
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.8e-195 686.0 412 77.2
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 2.3e-195 685.6 418 77.5
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 3.0e-195 685.3 416 78.1
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 3.0e-195 685.3 417 78.9
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 6.8e-195 684.1 416 79.3
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.2e-194 683.3 418 78.7
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 2.6e-194 682.2 417 77.9
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 2.6e-194 682.2 412 79.1
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 3.4e-194 681.8 412 76.7
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.7e-193 679.5 415 77.8
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 2.8e-193 678.7 409 77.8
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 3.7e-193 678.3 409 80.7
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-192 676.8 453 72.0
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.4e-192 676.4 419 78.5
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.4e-192 676.4 416 76.9
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 2.4e-192 675.6 420 77.4
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 9.1e-192 673.7 420 77.4
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 2.7e-191 672.2 411 77.6
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 5.9e-191 671.0 413 78.0
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 7.7e-191 670.6 502 66.9
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.0e-190 670.2 416 77.2
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.3e-190 669.8 412 77.7
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.7e-190 669.5 415 78.3
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 8.5e-190 667.2 416 75.2
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 8.0e-188 660.6 418 74.9
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 2.3e-187 659.1 420 76.9
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 3.0e-187 658.7 408 74.8
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 8.8e-187 657.1 420 73.8
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 7.5e-186 654.1 420 77.1
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 2.2e-185 652.5 413 73.1
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 6.3e-185 651.0 415 76.4
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 8.3e-185 650.6 416 76.2
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 2.7e-183 645.6 417 74.1
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 5.9e-183 644.4 409 73.6
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 6.8e-179 630.9 369 80.2
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.0e-178 629.4 412 72.8
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.1e-176 621.7 410 72.9
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 4.1e-176 621.7 421 68.6
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.3e-174 615.9 437 71.9
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 3.1e-171 605.5 363 78.8
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 9.8e-170 600.5 341 83.0
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.3e-169 600.1 360 77.2
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 7.0e-168 594.3 416 70.9
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 5.0e-166 588.2 341 79.8
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.7e-158 563.1 413 63.0
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 3.1e-155 552.4 419 65.9
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 3.8e-153 545.4 409 60.6
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 2.1e-151 539.7 412 61.7
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 2.1e-151 539.7 409 60.9
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 3.3e-141 505.8 301 81.1
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 3.8e-137 492.3 427 55.5
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.2e-135 487.3 345 69.0
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.9e-129 465.3 314 72.9
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 5.1e-126 455.3 301 76.1
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 2.7e-119 433.0 291 73.2
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 5.0e-113 412.1 223 86.5
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 4.3e-109 399.1 406 48.3
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.8e-107 393.7 498 41.6
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 2.0e-106 390.2 235 78.3
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.0e-105 387.9 407 48.6
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 3.3e-101 372.9 429 45.9
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.1e-96 357.8 198 84.3
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.7e-95 352.4 198 82.8
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.5e-93 347.4 245 67.8
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 3.8e-81 306.2 225 67.6
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-74 284.6 217 69.6
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 4.2e-72 276.2 258 58.1
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.5e-69 267.7 178 70.8
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.0e-65 255.0 163 75.5
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 5.6e-64 249.2 155 73.5
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.2e-63 248.1 179 69.3
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.9e-59 234.2 156 73.7
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 9.2e-59 231.9 229 54.1
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.9e-56 224.2 129 80.6
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.1e-54 218.4 181 61.9
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.0e-54 216.5 339 39.8
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.8e-53 212.6 124 78.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.1e-51 206.5 121 76.9
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.0e-51 205.7 345 39.1
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.1e-46 191.8 127 70.9
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 7.8e-42 175.6 100 83.0
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.4e-38 164.1 122 62.3
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.2e-31 141.7 88 75.0
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.3e-30 136.3 128 54.7
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 2.2e-28 131.0 66 86.4
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 3.5e-26 123.6 71 81.7
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 2.4e-19 100.9 59 81.4
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.0e-17 95.5 87 49.4
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 3.9e-17 93.6 87 49.4
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.8e-12 77.0 60 68.3
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 3.9e-09 67.0 56 60.7
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 5.6e-08 63.2 35 71.4
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 7.4e-08 62.8 134 31.3


User provided reference genes

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