Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 1.6e-291 1005.4 492 100.0
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 3.5e-219 765.0 500 75.6
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 3.0e-218 761.9 499 76.8
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 1.7e-213 746.1 498 73.3
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 3.2e-212 741.9 503 74.2
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 1.2e-211 740.0 512 73.0
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 4.8e-200 701.4 499 71.5
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 1.8e-199 699.5 508 69.5
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 7.7e-198 694.1 505 68.9
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 1.4e-196 689.9 501 70.1
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 8.8e-194 680.6 502 68.5
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 1.5e-193 679.9 497 70.0
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 3.7e-192 675.2 500 68.8
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 3.2e-188 662.1 501 66.5
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 2.3e-186 656.0 500 65.8
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 3.3e-185 652.1 500 65.4
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 2.2e-184 649.4 505 66.1
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 5.3e-183 644.8 499 65.9
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 3.6e-179 632.1 500 64.8
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 3.9e-178 628.6 503 64.8
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 6.7e-178 627.9 496 64.9
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 1.5e-177 626.7 496 64.9
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 7.4e-177 624.4 502 64.7
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.4e-175 620.2 503 64.0
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.3e-175 618.2 501 65.1
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 1.6e-174 616.7 498 63.1
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.5e-174 615.5 499 64.5
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.5e-174 615.1 499 64.5
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 4.5e-174 615.1 496 63.7
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 5.9e-174 614.8 498 64.9
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 1.3e-173 613.6 496 62.9
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 2.9e-173 612.5 501 63.7
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 5.5e-172 608.2 511 63.6
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 4.7e-171 605.1 498 62.9
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 8.0e-171 604.4 498 62.0
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.8e-170 603.2 498 62.9
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 8.8e-170 600.9 501 62.1
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 3.3e-169 599.0 508 61.4
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 1.7e-168 596.7 508 61.2
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 2.8e-168 595.9 499 61.1
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 6.3e-168 594.7 500 62.8
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 7.0e-167 591.3 498 61.2
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 4.5e-166 588.6 498 61.8
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 1.0e-165 587.4 501 61.9
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 1.3e-165 587.0 495 62.6
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 2.2e-165 586.3 500 61.8
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.1e-164 583.9 504 61.5
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 1.5e-164 583.6 497 61.6
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 3.2e-164 582.4 501 60.3
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 9.4e-164 580.9 496 62.3
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 2.7e-163 579.3 495 62.6
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 6.1e-163 578.2 499 61.5
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 4.0e-162 575.5 507 61.3
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 5.2e-162 575.1 497 59.8
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 1.2e-161 573.9 500 61.8
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.5e-161 573.5 500 58.8
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 1.5e-161 573.5 496 59.1
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 2.0e-161 573.2 496 59.9
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 2.6e-161 572.8 499 59.7
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 2.6e-161 572.8 501 58.5
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 3.4e-161 572.4 506 60.1
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 4.4e-161 572.0 496 58.9
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 7.5e-161 571.2 494 59.3
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 1.3e-160 570.5 499 59.5
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 1.7e-160 570.1 498 61.2
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 1.7e-160 570.1 506 61.3
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.7e-160 570.1 508 59.6
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 4.8e-160 568.5 433 66.3
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 2.4e-159 566.2 495 60.4
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 4.1e-159 565.5 496 60.5
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 4.1e-159 565.5 502 58.6
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 1.2e-158 563.9 502 58.8
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 1.2e-158 563.9 507 60.9
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 2.0e-158 563.1 503 60.2
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 2.7e-158 562.8 502 58.8
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 3.8e-157 558.9 494 59.9
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 3.8e-157 558.9 502 57.8
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 8.6e-157 557.8 497 57.9
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 5.5e-156 555.1 507 57.2
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 9.5e-156 554.3 506 60.1
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 2.8e-155 552.7 564 53.2
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 2.8e-155 552.7 506 59.5
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 8.0e-155 551.2 502 57.2
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 4.0e-154 548.9 509 58.2
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 2.0e-153 546.6 500 57.0
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 1.3e-152 543.9 514 55.3
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 2.8e-152 542.7 510 56.9
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 6.3e-152 541.6 497 58.8
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 6.3e-152 541.6 508 56.5
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 6.3e-152 541.6 506 56.3
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 1.1e-151 540.8 503 58.3
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 3.1e-151 539.3 509 56.4
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 4.1e-151 538.9 498 59.8
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 7.0e-151 538.1 497 57.7
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 2.0e-150 536.6 509 55.4
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 2.3e-149 533.1 501 56.9
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 3.9e-149 532.3 501 56.1
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 2.8e-147 526.2 498 56.0
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 3.6e-147 525.8 519 53.6
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 6.1e-147 525.0 497 55.1
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 3.4e-145 519.2 535 53.1
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 3.4e-145 519.2 506 53.8
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 2.9e-144 516.2 501 54.7
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 2.9e-144 516.2 504 54.2
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 4.9e-144 515.4 504 54.6
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 1.2e-142 510.8 501 55.3
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 2.0e-142 510.0 488 56.4
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 6.0e-142 508.4 513 56.9
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 3.9e-141 505.8 500 55.8
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 4.7e-139 498.8 506 53.0
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.1e-138 497.7 513 53.8
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 5.4e-135 485.3 513 50.9
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 3.5e-134 482.6 530 52.8
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 1.0e-133 481.1 518 51.7
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 4.7e-131 472.2 502 52.4
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 6.8e-130 468.4 529 50.1
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 5.8e-129 465.3 503 51.9
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 7.1e-127 458.4 501 50.9
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 3.0e-125 453.0 437 55.4
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.1e-124 451.1 513 50.1
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.7e-120 437.2 503 49.9
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 4.2e-119 432.6 497 49.7
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 1.5e-116 424.1 507 47.7
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 1.9e-116 423.7 468 54.1
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.6e-115 420.6 488 48.2
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 2.1e-115 420.2 352 61.6
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 2.4e-111 406.8 454 49.1
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 3.9e-109 399.4 331 63.4
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 9.3e-103 378.3 411 50.1
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 1.6e-102 377.5 279 64.2
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 7.9e-102 375.2 346 58.7
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 3.7e-99 366.3 527 45.0
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 1.1e-98 364.8 374 53.5
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 6.9e-98 362.1 348 54.9
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.4e-90 337.8 509 41.8
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 4.5e-89 332.8 339 53.7
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 1.5e-81 307.8 343 50.4
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 2.0e-81 307.4 437 43.9
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 1.3e-80 304.7 414 44.9
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 1.3e-80 304.7 501 40.3
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 1.4e-79 301.2 295 59.0
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 9.4e-79 298.5 342 48.8
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 2.2e-75 287.3 506 39.1
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 3.1e-74 283.5 280 57.5
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 5.3e-74 282.7 531 37.5
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 6.5e-72 275.8 416 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 4.2e-71 273.1 526 36.7
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 6.7e-69 265.8 284 47.5
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 7.4e-68 262.3 212 63.2
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 9.1e-58 228.8 410 38.5
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 4.7e-54 216.5 527 34.5
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 2.6e-52 210.7 633 29.4
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 7.2e-47 192.6 200 54.0
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 1.4e-42 178.3 147 59.9
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.2e-38 165.2 141 63.1
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 4.1e-34 150.2 520 30.4
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 1.2e-33 148.7 532 28.6
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.9e-32 144.1 134 56.7
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 2.8e-30 137.5 98 72.4
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 1.0e-29 135.6 130 56.9
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 1.0e-29 135.6 93 67.7
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 3.2e-26 124.0 586 25.1
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.0e-24 119.0 80 70.0
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 2.3e-21 107.8 115 52.2
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 2.6e-20 104.4 100 50.0
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 7.5e-20 102.8 94 55.3
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 9.8e-20 102.4 128 45.3
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 4.1e-18 97.1 68 66.2
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 2.1e-17 94.7 108 47.2
Dinv17119 Davidia involucrata HOM05D003691 ORTHO05D004288 5.1e-16 90.1 80 60.0
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.1e-15 89.0 111 47.7
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 9.5e-15 85.9 92 48.9
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 3.6e-14 84.0 51 82.4
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 2.3e-13 81.3 54 64.8
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 3.4e-12 77.4 95 48.4
Dinv01749 Davidia involucrata HOM05D003691 ORTHO05D004288 7.6e-12 76.3 52 69.2
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 4.9e-11 73.6 57 56.1
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 6.4e-11 73.2 50 62.0
Dinv18681 Davidia involucrata HOM05D003691 ORTHO05D004288 1.4e-10 72.0 48 68.8
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 3.9e-08 63.9 46 65.2


User provided reference genes

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