Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.2e-104 384.8 585 100.0
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.2e-102 376.3 585 99.3
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.2e-102 376.3 585 99.3
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 9.8e-67 258.8 172 75.0
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 1.2e-51 208.8 167 64.7
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 3.4e-51 207.2 176 60.2
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 7.5e-51 206.1 173 59.5
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 9.8e-51 205.7 172 60.5
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 2.2e-50 204.5 174 62.1
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 1.9e-49 201.4 173 60.1
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.2e-48 198.7 172 63.4
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 2.0e-48 198.0 175 59.4
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 2.0e-48 198.0 175 59.4
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 6.0e-48 196.4 173 56.1
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 5.0e-47 193.4 177 53.1
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 5.6e-46 189.9 174 58.0
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 1.4e-44 185.3 170 54.7
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 1.4e-44 185.3 171 58.5
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.3e-44 184.5 176 53.4
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 2.3e-44 184.5 170 53.5
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 5.2e-44 183.3 172 57.6
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 6.8e-44 183.0 172 50.6
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 6.8e-44 183.0 172 55.2
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 5.8e-43 179.9 170 55.3
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 4.9e-42 176.8 171 56.1
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 1.4e-41 175.3 181 50.3
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 3.2e-41 174.1 171 52.0
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 3.2e-41 174.1 173 54.3
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 3.9e-39 167.2 172 48.8
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 2.5e-38 164.5 173 51.4
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 2.8e-37 161.0 175 52.6
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 2.8e-37 161.0 138 56.5
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 6.2e-37 159.8 170 51.2
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 6.2e-37 159.8 172 51.7
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 6.2e-37 159.8 178 47.8
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.4e-36 158.7 99 70.7
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 1.4e-36 158.7 170 50.0
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 3.1e-36 157.5 174 49.4
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 3.1e-36 157.5 184 46.7
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 5.2e-36 156.8 131 56.5
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 5.2e-36 156.8 162 48.8
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 3.7e-34 150.6 181 45.9
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 6.4e-34 149.8 184 45.7
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 8.3e-34 149.4 175 45.7
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 1.4e-33 148.7 178 46.1
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 1.9e-33 148.3 175 46.3
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 5.4e-33 146.7 148 50.7
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 7.1e-33 146.4 172 47.7
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 9.2e-33 146.0 176 44.9
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 9.2e-33 146.0 176 44.9
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 2.1e-32 144.8 148 50.0
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 2.1e-32 144.8 176 44.9
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 6.0e-32 143.3 108 63.9
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 6.0e-32 143.3 149 51.7
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 7.8e-32 142.9 172 44.2
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 7.8e-32 142.9 175 46.3
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 1.3e-31 142.1 148 50.0
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 1.3e-31 142.1 148 50.0
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-31 141.7 176 43.8
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.7e-31 141.7 175 45.7
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 3.0e-31 141.0 221 39.8
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 3.9e-31 140.6 97 63.9
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 1.1e-28 132.5 168 43.5
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 7.6e-27 126.3 136 44.9
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 9.9e-27 125.9 137 44.5
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 2.9e-26 124.4 170 42.9
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 4.9e-26 123.6 182 40.1
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 6.4e-26 123.2 140 49.3
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 6.4e-26 123.2 154 45.5
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 7.1e-25 119.8 176 39.8
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 1.6e-24 118.6 99 58.6
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 1.6e-24 118.6 171 42.7
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 3.5e-24 117.5 73 69.9
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 2.3e-23 114.8 175 41.7
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 3.0e-23 114.4 148 42.6
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 3.9e-23 114.0 171 41.5
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 1.5e-22 112.1 140 42.1
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 7.3e-22 109.8 74 63.5
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 2.8e-21 107.8 69 72.5
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 6.2e-21 106.7 150 39.3
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 9.0e-20 102.8 140 43.6
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 2.0e-19 101.7 81 61.7
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 2.9e-18 97.8 150 36.7
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 6.4e-18 96.7 148 37.2
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 6.4e-18 96.7 218 31.7
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 2.4e-17 94.7 156 39.1
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 1.2e-16 92.4 157 35.7
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 2.7e-16 91.3 119 44.5
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 2.7e-16 91.3 137 40.1
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 2.3e-15 88.2 108 41.7
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 5.1e-15 87.0 67 58.2
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 2.8e-13 81.3 46 76.1
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 2.0e-11 75.1 46 73.9
Thhalv10022408m.g Eutrema salsugineum HOM05D007620 ORTHO05D009568 7.6e-11 73.2 44 72.7
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 9.9e-11 72.8 92 41.3
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 9.9e-11 72.8 43 72.1
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.7e-10 72.0 104 41.3
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 1.7e-10 72.0 43 69.8
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.2e-10 71.6 92 45.7
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.2e-10 71.6 92 45.7
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 6.4e-10 70.1 43 69.8
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.0e-07 62.8 101 42.6
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 1.0e-07 62.8 93 36.6
Prupe.8G196100 Prunus persica HOM05D008810 ORTHO05D010971 1.1e-06 59.3 97 29.9
MSTRG.21866 Avicennia marina HOM05D000424 ORTHO05D000355 2.5e-06 58.2 99 29.3
Ciclev10028053m.g Citrus clementina HOM05D000162 ORTHO05D000090 4.3e-06 57.4 120 34.2
MD10G1157300 Malus domestica HOM05D008810 ORTHO05D010971 4.3e-06 57.4 96 29.2
CARHR144310 Cardamine hirsuta HOM05D008835 ORTHO05D011094 5.6e-06 57.0 80 35.0
Lj1g0027273 Lotus japonicus HOM05D008470 ORTHO05D010644 9.6e-06 56.2 164 29.3


User provided reference genes

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