Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.1e-41 171.8 79 100.0
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.2e-25 117.1 57 96.5
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 8.1e-25 116.7 57 93.0
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.4e-24 115.9 57 93.0
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.4e-24 115.9 57 93.0
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.4e-24 115.9 57 93.0
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 1.4e-24 115.9 57 93.0
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.1e-24 114.8 57 91.2
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 4.0e-24 114.4 57 91.2
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 5.2e-24 114.0 57 91.2
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 5.2e-24 114.0 57 91.2
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 6.9e-24 113.6 57 89.5
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 6.9e-24 113.6 57 89.5
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 6.9e-24 113.6 57 89.5
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 9.0e-24 113.2 57 89.5
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 9.0e-24 113.2 57 89.5
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 9.0e-24 113.2 57 89.5
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.2e-23 112.8 57 91.2
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.2e-23 112.8 57 91.2
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.5e-23 112.5 57 91.2
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.5e-23 112.5 57 89.5
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.5e-23 112.5 57 89.5
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 1.5e-23 112.5 57 89.5
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.5e-23 112.5 79 69.6
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 2.0e-23 112.1 64 79.7
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 2.0e-23 112.1 57 89.5
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.0e-23 112.1 57 87.7
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.0e-23 112.1 57 89.5
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 2.6e-23 111.7 57 89.5
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 3.4e-23 111.3 57 89.5
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.4e-23 111.3 57 89.5
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 3.4e-23 111.3 57 89.5
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 3.4e-23 111.3 57 87.7
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 4.4e-23 110.9 57 87.7
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 4.4e-23 110.9 57 87.7
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.8e-23 110.5 59 86.4
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 5.8e-23 110.5 57 89.5
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 5.8e-23 110.5 57 87.7
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 5.8e-23 110.5 57 87.7
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 5.8e-23 110.5 57 89.5
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 7.6e-23 110.2 57 86.0
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 7.6e-23 110.2 57 86.0
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 7.6e-23 110.2 57 87.7
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 7.6e-23 110.2 57 87.7
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 7.6e-23 110.2 57 87.7
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 9.9e-23 109.8 57 86.0
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 9.9e-23 109.8 57 87.7
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 9.9e-23 109.8 57 87.7
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 9.9e-23 109.8 57 87.7
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.3e-22 109.4 54 92.6
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.7e-22 109.0 57 86.0
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 2.2e-22 108.6 57 86.0
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.9e-22 108.2 57 87.7
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 2.9e-22 108.2 57 86.0
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 3.8e-22 107.8 57 86.0
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 3.8e-22 107.8 57 86.0
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 3.8e-22 107.8 57 86.0
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 4.9e-22 107.5 57 84.2
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 4.9e-22 107.5 57 86.0
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 4.9e-22 107.5 57 82.5
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 4.9e-22 107.5 57 84.2
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 4.9e-22 107.5 57 86.0
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.9e-22 107.5 57 84.2
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.9e-22 107.5 57 82.5
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 4.9e-22 107.5 57 86.0
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 4.9e-22 107.5 56 85.7
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 6.4e-22 107.1 57 84.2
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 6.4e-22 107.1 57 86.0
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 8.4e-22 106.7 57 82.5
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 8.4e-22 106.7 57 82.5
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 8.4e-22 106.7 57 86.0
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 8.4e-22 106.7 56 87.5
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 8.4e-22 106.7 56 89.3
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 8.4e-22 106.7 56 89.3
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.1e-21 106.3 57 84.2
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.1e-21 106.3 57 84.2
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.1e-21 106.3 57 82.5
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.1e-21 106.3 57 86.0
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.4e-21 105.9 57 80.7
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 1.4e-21 105.9 57 82.5
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 1.4e-21 105.9 57 82.5
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.4e-21 105.9 57 82.5
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.4e-21 105.9 59 83.1
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.4e-21 105.9 57 80.7
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.4e-21 105.9 57 80.7
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 1.4e-21 105.9 57 84.2
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.9e-21 105.5 63 77.8
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.9e-21 105.5 57 80.7
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.9e-21 105.5 57 80.7
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.9e-21 105.5 58 79.3
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-21 105.5 57 80.7
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-21 105.5 57 80.7
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-21 105.5 57 80.7
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 1.9e-21 105.5 57 80.7
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.9e-21 105.5 57 80.7
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.9e-21 105.5 57 80.7
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 2.4e-21 105.1 57 80.7
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 2.4e-21 105.1 57 80.7
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 2.4e-21 105.1 57 78.9
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 2.4e-21 105.1 57 80.7
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.4e-21 105.1 57 84.2
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 2.4e-21 105.1 57 80.7
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.2e-21 104.8 57 82.5
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 3.2e-21 104.8 55 85.5
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 3.2e-21 104.8 57 80.7
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 3.2e-21 104.8 57 82.5
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 4.2e-21 104.4 57 82.5
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 4.2e-21 104.4 57 82.5
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 4.2e-21 104.4 57 82.5
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 4.2e-21 104.4 57 82.5
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 5.4e-21 104.0 57 80.7
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 5.4e-21 104.0 55 85.5
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 7.1e-21 103.6 57 80.7
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 9.3e-21 103.2 57 80.7
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 9.3e-21 103.2 57 82.5
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.2e-20 102.8 57 78.9
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.2e-20 102.8 55 81.8
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.2e-20 102.8 55 87.3
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.6e-20 102.4 55 81.8
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.6e-20 102.4 57 78.9
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.1e-20 102.1 57 78.9
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 2.1e-20 102.1 57 82.5
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 2.1e-20 102.1 57 82.5
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 4.6e-20 100.9 55 83.6
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 2.3e-19 98.6 55 78.2
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.9e-19 97.8 57 78.9
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 3.9e-19 97.8 57 73.7
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 5.1e-19 97.4 56 78.6
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 5.1e-19 97.4 62 72.6
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 8.7e-19 96.7 55 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 9.6e-18 93.2 53 79.2
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.3e-17 92.8 57 73.7
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 2.8e-17 91.7 57 66.7
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 2.4e-16 88.6 57 66.7
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 3.1e-16 88.2 57 68.4
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 5.3e-16 87.4 56 69.6
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.9e-13 79.0 57 59.6
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 5.4e-13 77.4 55 65.5
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.6e-12 75.9 57 56.1
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 2.7e-12 75.1 54 55.6
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 4.3e-10 67.8 37 81.1
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 4.8e-09 64.3 43 72.1
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.1e-08 61.6 28 92.9
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 5.3e-08 60.8 35 77.1


User provided reference genes

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