Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.3e-117 425.6 220 100.0
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 2.1e-78 296.2 217 71.4
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 6.1e-70 268.1 226 66.4
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 3.8e-64 248.8 191 67.0
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.9e-63 246.5 212 56.6
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.2e-62 243.8 212 56.6
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 6.1e-62 241.5 213 60.1
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 5.1e-61 238.4 231 58.4
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 2.0e-60 236.5 216 58.8
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 4.4e-60 235.3 206 59.7
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 1.3e-59 233.8 208 56.2
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 1.2e-57 227.3 219 57.1
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 5.9e-57 224.9 218 57.8
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 1.7e-56 223.4 208 54.3
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 3.8e-56 222.2 208 53.8
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 9.4e-55 217.6 215 57.2
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 1.6e-54 216.9 209 56.5
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 2.1e-54 216.5 214 52.8
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 2.1e-54 216.5 214 56.5
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 3.6e-54 215.7 214 57.5
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 4.7e-54 215.3 214 55.6
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 7.9e-54 214.5 214 56.5
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 7.9e-54 214.5 177 61.6
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 1.8e-53 213.4 187 57.8
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 2.3e-53 213.0 220 55.0
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 2.3e-53 213.0 222 53.2
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 1.1e-52 210.7 178 61.8
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 7.4e-52 208.0 310 43.5
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 8.2e-51 204.5 217 53.5
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 3.1e-50 202.6 223 53.8
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 4.1e-50 202.2 210 51.0
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 5.3e-50 201.8 215 52.1
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 5.3e-50 201.8 210 50.5
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.2e-49 200.7 213 51.2
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 2.6e-49 199.5 211 50.2
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 3.5e-49 199.1 211 55.0
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 3.5e-49 199.1 209 53.6
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 3.5e-49 199.1 209 53.6
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 4.5e-49 198.7 176 56.2
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 7.7e-49 198.0 217 51.2
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.0e-48 197.6 213 53.5
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 1.3e-48 197.2 183 57.4
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.2e-48 196.4 186 55.4
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 2.2e-48 196.4 213 52.6
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 2.9e-48 196.1 213 52.6
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 3.8e-48 195.7 177 57.6
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 5.0e-48 195.3 214 52.8
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 8.5e-48 194.5 186 55.9
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 5.5e-47 191.8 199 52.3
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 7.2e-47 191.4 219 52.5
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 9.4e-47 191.0 208 51.0
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 3.6e-46 189.1 181 56.4
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 4.7e-46 188.7 215 48.4
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 8.0e-46 188.0 210 52.9
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 1.0e-45 187.6 214 50.0
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 1.0e-45 187.6 222 48.6
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 1.4e-45 187.2 224 52.7
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 2.3e-45 186.4 175 57.7
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 4.0e-45 185.7 190 54.7
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 1.5e-44 183.7 205 48.8
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 2.6e-44 183.0 207 52.2
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 3.3e-44 182.6 218 46.3
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 5.7e-44 181.8 228 48.2
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 9.7e-44 181.0 223 47.5
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.7e-43 180.3 229 48.5
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 3.7e-43 179.1 223 48.9
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 1.4e-42 177.2 180 51.1
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 1.8e-42 176.8 216 50.5
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.8e-42 176.8 184 54.9
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 3.1e-42 176.0 218 45.0
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 5.3e-42 175.3 222 45.9
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 7.0e-42 174.9 220 45.5
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.2e-41 174.1 218 46.3
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 5.0e-40 168.7 174 54.6
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 5.0e-40 168.7 218 46.3
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 8.5e-40 167.9 173 53.8
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 1.5e-39 167.2 223 44.4
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 1.5e-39 167.2 219 44.7
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.5e-39 167.2 271 42.1
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 7.2e-39 164.9 142 64.1
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 1.0e-37 161.0 194 47.9
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 1.8e-37 160.2 182 51.1
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 4.0e-37 159.1 177 50.3
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 6.8e-37 158.3 219 43.4
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 2.0e-36 156.8 221 45.2
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 5.7e-36 155.2 175 50.9
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 9.8e-36 154.5 191 44.5
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 4.8e-35 152.1 174 50.6
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 7.0e-34 148.3 140 55.0
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 1.2e-33 147.5 83 92.8
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 3.5e-33 146.0 214 42.1
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 7.7e-33 144.8 175 48.6
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 2.2e-32 143.3 172 45.9
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 3.8e-32 142.5 181 45.3
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 9.5e-31 137.9 178 42.7
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 2.1e-30 136.7 173 45.1
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 2.0e-28 130.2 196 39.8
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 6.3e-27 125.2 191 40.8
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 8.3e-27 124.8 149 48.3
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 3.1e-26 122.9 149 45.0
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 3.5e-25 119.4 202 38.1
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 3.8e-24 115.9 171 38.6
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 6.6e-24 115.2 142 45.8
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 6.8e-21 105.1 109 52.3
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 7.8e-17 91.7 173 34.7
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 1.5e-15 87.4 105 43.8
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 6.2e-14 82.0 69 55.1
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 6.2e-14 82.0 69 55.1
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 2.3e-08 63.5 123 31.7
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 8.6e-08 61.6 146 32.9
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 2.1e-06 57.0 86 39.5


User provided reference genes

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