Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013413 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 4.4e-35 150.6 69 100.0
CSS0008037 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.4e-28 129.0 68 83.8
CSS0010490 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.4e-28 129.0 69 82.6
CSS0038597 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.4e-28 129.0 68 83.8
CSS0045099 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.8e-28 128.6 68 83.8
CSS0035901 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 3.1e-28 127.9 68 82.4
CSS0035075 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 6.8e-28 126.7 68 82.4
CSS0020531 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 2.9e-26 121.3 68 77.9
CSS0034635 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D003213 9.2e-25 116.3 68 70.6
CSS0007628 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 4.6e-24 114.0 68 72.1
CSS0024795 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.3e-23 112.5 66 69.7
CSS0041464 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 1.3e-23 112.5 66 69.7
CSS0002050 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D003213 2.1e-21 105.1 63 71.4
Rhsim01G0119700 Rhododendron simsii HOM05D000107 ORTHO05D003213 4.7e-21 104.0 68 67.6
Rhsim09G0057000 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.6e-16 87.4 68 61.8
Rhsim04G0237300 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.0e-16 87.0 68 63.2
Rhsim07G0185300 Rhododendron simsii HOM05D000107 ORTHO05D003213 1.7e-15 85.5 68 57.4
CSS0003322 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.1e-15 84.0 68 58.8
CSS0012803 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.1e-15 84.0 68 58.8
CSS0024740 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.1e-15 84.0 68 58.8
CSS0032482 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.1e-15 84.0 68 58.8
CSS0047068 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.1e-15 84.0 68 58.8
CSS0048301 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.1e-15 84.0 68 58.8
Rhsim07G0158800 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-14 82.8 68 54.4
RhsimUnG0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-14 82.8 68 54.4
Rhsim10G0071800 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.5e-14 82.4 68 54.4
CSS0022362 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 2.5e-14 81.6 68 48.5
RhsimUnG0074200 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.5e-14 81.6 68 52.9
Rhsim01G0128800 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.3e-14 80.1 68 52.9
RhsimUnG0068500 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.6e-13 79.0 68 51.5
CSS0014387 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.8e-13 77.4 68 55.9
Rhsim10G0071900 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-12 76.3 68 51.5
Rhsim01G0076100 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.2e-11 72.8 63 58.7
EL10Ac1g02206 Beta vulgaris HOM05D000107 ORTHO05D000062 4.9e-10 67.4 65 47.7
EL10Ac9g22369 Beta vulgaris HOM05D000107 ORTHO05D000062 4.9e-10 67.4 65 47.7
Migut.K00946 Erythranthe guttata HOM05D000107 ORTHO05D003213 8.4e-10 66.6 65 43.1
Rhsim06G0126900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.4e-09 65.1 68 42.6
Rhsim11G0005900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.4e-09 65.1 68 42.6
Rhsim12G0007200 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.2e-09 64.3 68 45.6
CANSAT64G1316 Cannabis sativa HOM05D000107 ORTHO05D000062 5.4e-09 63.9 69 44.9
Rhsim10G0126500 Rhododendron simsii HOM05D000107 ORTHO05D000062 9.3e-09 63.2 68 42.6
PSO729G0206 Papaver somniferum HOM05D000107 ORTHO05D000062 1.2e-08 62.8 65 46.2
Migut.O00078 Erythranthe guttata HOM05D000107 ORTHO05D000062 1.6e-08 62.4 65 40.0
FvH4_4g08648 Fragaria vesca HOM05D000107 ORTHO05D000062 1.6e-08 62.4 65 44.6
Rhsim01G0140400 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-08 62.0 38 68.4
Rhsim05G0124400 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-08 62.0 68 44.1
Rhsim11G0023200 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-08 62.0 68 44.1
Rhsim11G0024300 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-08 62.0 68 42.6
Rhsim04G0055300 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.5e-08 61.2 66 42.4
Atru.chr10.32 Acer truncatum HOM05D000107 ORTHO05D000062 4.6e-08 60.8 69 42.0
Atru.chr3.2737 Acer truncatum HOM05D000107 ORTHO05D000062 4.6e-08 60.8 69 42.0
CANSAT64G0367 Cannabis sativa HOM05D000107 ORTHO05D000062 4.6e-08 60.8 65 44.6
Rhsim01G0178900 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.0e-08 60.5 66 42.4
CANSAT80G1283 Cannabis sativa HOM05D013174 ORTHO05D015289 7.9e-08 60.1 68 41.2
Hma1.2p1_1033F.1_g250230 Hydrangea macrophylla HOM05D000107 ORTHO05D003213 7.9e-08 60.1 68 45.6
CANSAT25G1518 Cannabis sativa HOM05D000107 ORTHO05D000062 1.0e-07 59.7 64 42.2
CANSAT64G1673 Cannabis sativa HOM05D000107 ORTHO05D000062 1.0e-07 59.7 64 46.9
CANSAT64G2733 Cannabis sativa HOM05D000107 ORTHO05D000062 1.0e-07 59.7 64 46.9
Lj1g0007648 Lotus japonicus HOM05D000107 ORTHO05D003213 1.0e-07 59.7 65 50.8
RcHm_v2.0_Chr4g0414991 Rosa chinensis HOM05D000107 ORTHO05D003213 1.8e-07 58.9 67 43.3
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.3e-07 58.5 64 48.4
Rhsim09G0134500 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.3e-07 58.5 64 48.4
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.3e-07 58.5 68 41.2
RhsimUnG0032800 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.3e-07 58.5 68 41.2
VMungo0540G0166 Vigna mungo HOM05D044776 ORTHO05D003213 2.3e-07 58.5 67 41.8
VMungo1309G1266 Vigna mungo HOM05D000107 ORTHO05D003213 2.3e-07 58.5 67 41.8
Aqoxy2G02171 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 3.0e-07 58.2 67 44.8
CANSAT80G1036 Cannabis sativa HOM05D000107 ORTHO05D000062 3.0e-07 58.2 68 36.8
AUR62026517 Chenopodium quinoa HOM05D009516 ORTHO05D010476 3.0e-07 58.2 69 44.9
Oeu004802.1 Olea europaea HOM05D000107 ORTHO05D003213 3.0e-07 58.2 68 42.6
Rhsim01G0019000 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.0e-07 58.2 68 44.1
TWI31G1320 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 3.0e-07 58.2 65 43.1
TAR055G0004 Trochodendron aralioides HOM05D000107 ORTHO05D000062 3.0e-07 58.2 64 48.4
Aqoxy6G01994 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 3.9e-07 57.8 67 44.8
CANSAT01G1055 Cannabis sativa HOM05D000107 ORTHO05D000062 3.9e-07 57.8 64 39.1
AUR62024081 Chenopodium quinoa HOM05D003888 ORTHO05D003213 3.9e-07 57.8 63 41.3
CANSAT11G2258 Cannabis sativa HOM05D000107 ORTHO05D000062 5.1e-07 57.4 64 48.4
CANSAT54G2011 Cannabis sativa HOM05D000107 ORTHO05D000062 5.1e-07 57.4 68 38.2
CANSAT56G2540 Cannabis sativa HOM05D000107 ORTHO05D000062 5.1e-07 57.4 68 38.2
Hma1.2p1_1229F.1_g268720 Hydrangea macrophylla HOM05D000107 ORTHO05D003213 5.1e-07 57.4 72 40.3
COL.COLO4_24166 Corchorus olitorius HOM05D000107 ORTHO05D003213 6.7e-07 57.0 67 40.3
Psat3g162080 Pisum sativum HOM05D000107 ORTHO05D003213 6.7e-07 57.0 68 38.2
Ah.10g024720 Amaranthus hybridus HOM05D000107 ORTHO05D000062 8.7e-07 56.6 70 42.9
CANSAT64G1192 Cannabis sativa HOM05D000107 ORTHO05D000062 8.7e-07 56.6 65 43.1
CANSAT78G0770 Cannabis sativa HOM05D000107 ORTHO05D000062 8.7e-07 56.6 64 40.6
Nitab4.5_0006332g0050 Nicotiana tabacum HOM05D003120 ORTHO05D003568 8.7e-07 56.6 69 46.4
Prupe.1G266000 Prunus persica HOM05D000107 ORTHO05D000062 8.7e-07 56.6 67 43.3
Rhsim01G0104600 Rhododendron simsii HOM05D000107 ORTHO05D000062 8.7e-07 56.6 64 45.3
Rhsim01G0164300 Rhododendron simsii HOM05D000107 ORTHO05D000062 8.7e-07 56.6 64 45.3
Rhsim04G0033300 Rhododendron simsii HOM05D000107 ORTHO05D000062 8.7e-07 56.6 64 45.3
VMungo0251G1001 Vigna mungo HOM05D000028 ORTHO05D001343 8.7e-07 56.6 67 40.3
Aqoxy3G01844 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 1.1e-06 56.2 68 42.6
CANSAT78G1492 Cannabis sativa HOM05D000107 ORTHO05D000062 1.1e-06 56.2 64 46.9
AUR62040068 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.1e-06 56.2 63 41.3
MBI06_g42454_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D003213 1.1e-06 56.2 47 51.1
Nitab4.5_0000757g0030 Nicotiana tabacum HOM05D003120 ORTHO05D010952 1.1e-06 56.2 68 39.7
Oeu062448.1 Olea europaea HOM05D000107 ORTHO05D003213 1.1e-06 56.2 66 42.4
Rhsim05G0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-06 56.2 64 46.9
Atru.chr3.1417 Acer truncatum HOM05D000107 ORTHO05D000062 1.5e-06 55.8 67 41.8
AUR62022287 Chenopodium quinoa HOM05D000107 ORTHO05D003213 1.5e-06 55.8 63 41.3
AUR62024141 Chenopodium quinoa HOM05D007123 ORTHO05D003213 1.5e-06 55.8 47 48.9
MBI11_g22671_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-06 55.8 67 44.8
TWI79G0232 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 1.5e-06 55.8 64 43.8
VMungo0331G0246 Vigna mungo HOM05D000107 ORTHO05D003213 1.5e-06 55.8 67 40.3
CSS0035542 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.9e-06 55.5 64 45.3
Nitab4.5_0005820g0060 Nicotiana tabacum HOM05D003120 ORTHO05D010952 1.9e-06 55.5 68 39.7
RhsimUnG0018000 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.9e-06 55.5 71 39.4
TWI32G1228 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 1.9e-06 55.5 64 42.2
Atru.chr4.799 Acer truncatum HOM05D000107 ORTHO05D000062 2.5e-06 55.1 66 42.4
CANSAT54G1543 Cannabis sativa HOM05D000107 ORTHO05D000062 2.5e-06 55.1 64 35.9
CANSAT71G0016 Cannabis sativa HOM05D000107 ORTHO05D000062 2.5e-06 55.1 64 35.9
CANSAT78G2036 Cannabis sativa HOM05D000107 ORTHO05D000062 2.5e-06 55.1 64 46.9
HanXRQChr03g0071531 Helianthus annuus HOM05D000107 ORTHO05D000062 2.5e-06 55.1 60 41.7
HanXRQChr04g0099071 Helianthus annuus HOM05D000107 ORTHO05D000062 2.5e-06 55.1 60 41.7
HanXRQChr05g0149051 Helianthus annuus HOM05D000107 ORTHO05D000062 2.5e-06 55.1 60 41.7
QL01p005110 Quercus lobata HOM05D000107 ORTHO05D000062 2.5e-06 55.1 72 38.9
Rhsim02G0220700 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.5e-06 55.1 64 46.9
Rhsim06G0085100 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.5e-06 55.1 64 46.9
Rhsim08G0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.5e-06 55.1 64 46.9
Atru.chr11.780 Acer truncatum HOM05D000107 ORTHO05D000062 3.3e-06 54.7 66 42.4
Atru.chr2.1683 Acer truncatum HOM05D000107 ORTHO05D000062 3.3e-06 54.7 66 42.4
EL10Ac6g13764 Beta vulgaris HOM05D009516 ORTHO05D010476 3.3e-06 54.7 68 39.7
CANSAT56G0128 Cannabis sativa HOM05D024511 ORTHO05D003213 3.3e-06 54.7 68 35.3
CANSAT56G3353 Cannabis sativa HOM05D024511 ORTHO05D003213 3.3e-06 54.7 68 35.3
CANSAT64G0358 Cannabis sativa HOM05D000107 ORTHO05D000062 3.3e-06 54.7 68 38.2
CANSAT80G1543 Cannabis sativa HOM05D000107 ORTHO05D000062 3.3e-06 54.7 68 35.3
AUR62022208 Chenopodium quinoa HOM05D009516 ORTHO05D010476 3.3e-06 54.7 69 43.5
HanXRQChr14g0441971 Helianthus annuus HOM05D000107 ORTHO05D000062 3.3e-06 54.7 68 44.1
Lj2g0003377 Lotus japonicus HOM05D000107 ORTHO05D000062 3.3e-06 54.7 65 46.2
Lj4g0021587 Lotus japonicus HOM05D000107 ORTHO05D000062 3.3e-06 54.7 65 46.2
Solyc11g044933.1 Solanum lycopersicum HOM05D000107 ORTHO05D000062 3.3e-06 54.7 63 46.0
TWI15G0534 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 3.3e-06 54.7 65 41.5
CSS0006285 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.3e-06 54.3 64 45.3
CSS0013019 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.3e-06 54.3 64 45.3
CSS0020176 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.3e-06 54.3 64 45.3
CSS0020537 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.3e-06 54.3 64 45.3
CSS0022844 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.3e-06 54.3 64 45.3
CSS0034159 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.3e-06 54.3 64 45.3
CSS0036792 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.3e-06 54.3 64 45.3
CSS0038506 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.3e-06 54.3 64 45.3
CSS0043987 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.3e-06 54.3 64 45.3
AUR62041237 Chenopodium quinoa HOM05D009516 ORTHO05D010476 4.3e-06 54.3 69 43.5
ECA246G2093 Erigeron canadensis HOM05D000107 ORTHO05D000062 4.3e-06 54.3 64 45.3
RcHm_v2.0_Chr1g0331761 Rosa chinensis HOM05D000107 ORTHO05D003213 4.3e-06 54.3 68 35.3
CSS0018002 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.6e-06 53.9 68 39.7
CSS0028705 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.6e-06 53.9 68 39.7
CSS0031171 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.6e-06 53.9 68 39.7
CSS0033153 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.6e-06 53.9 64 45.3
CSS0036122 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.6e-06 53.9 68 39.7
CSS0047073 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.6e-06 53.9 68 39.7
ECA246G0108 Erigeron canadensis HOM05D000107 ORTHO05D000062 5.6e-06 53.9 64 35.9
ECA246G5051 Erigeron canadensis HOM05D000107 ORTHO05D000062 5.6e-06 53.9 64 45.3
TWI59G1300 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 5.6e-06 53.9 68 35.3
VMungo0720G2941 Vigna mungo HOM05D000107 ORTHO05D000062 5.6e-06 53.9 52 44.2
Atru.chr2.1893 Acer truncatum HOM05D000107 ORTHO05D000062 7.4e-06 53.5 66 40.9
BolC8t47633H Brassica oleracea HOM05D015909 ORTHO05D016795 7.4e-06 53.5 61 39.3
CANSAT25G3813 Cannabis sativa HOM05D054931 ORTHO05D003213 7.4e-06 53.5 68 33.8
Ca_02256_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 35.3
Ca_14973_v3 Cicer arietinum L. HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 35.3
PSO170G6590 Papaver somniferum HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 38.2
PSO801G0365 Papaver somniferum HOM05D000107 ORTHO05D000062 7.4e-06 53.5 69 39.1
QL05p055903 Quercus lobata HOM05D000240 ORTHO05D003213 7.4e-06 53.5 68 39.7
Rhsim09G0096400 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.4e-06 53.5 68 41.2
TAR049G0006 Trochodendron aralioides HOM05D000107 ORTHO05D000062 7.4e-06 53.5 64 45.3
VMungo0464G1358 Vigna mungo HOM05D000107 ORTHO05D000062 7.4e-06 53.5 55 41.8
Ah.06g185260 Amaranthus hybridus HOM05D000107 ORTHO05D000062 9.6e-06 53.1 58 44.8
MELO3C035254.2 Cucumis melo HOM05D011461 ORTHO05D003213 9.6e-06 53.1 61 42.6
CsaV3_3G021750 Cucumis sativus L. HOM05D000107 ORTHO05D003213 9.6e-06 53.1 68 38.2
CsaV3_7G011410 Cucumis sativus L. HOM05D000107 ORTHO05D003213 9.6e-06 53.1 68 39.7
ECA232G3917 Erigeron canadensis HOM05D000107 ORTHO05D000062 9.6e-06 53.1 64 45.3
MBI17_g17142_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.6e-06 53.1 49 51.0
Nitab4.5_0000026g0170 Nicotiana tabacum HOM05D011106 ORTHO05D010952 9.6e-06 53.1 64 43.8
Nitab4.5_0009388g0030 Nicotiana tabacum HOM05D011106 ORTHO05D010952 9.6e-06 53.1 68 42.6
Oeu017731.1 Olea europaea HOM05D000107 ORTHO05D003213 9.6e-06 53.1 66 39.4
Oeu017732.1 Olea europaea HOM05D000107 ORTHO05D003213 9.6e-06 53.1 66 39.4
Sopen01g021020 Solanum pennellii HOM05D000107 ORTHO05D009932 9.6e-06 53.1 63 46.0


User provided reference genes

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