Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.9e-144 515.8 252 100.0
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 6.1e-143 510.8 252 98.8
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 5.1e-113 411.4 255 78.8
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.1e-111 406.0 252 78.2
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 7.3e-104 380.9 256 74.6
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.3e-103 380.2 255 72.2
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 3.1e-102 375.6 258 71.7
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 4.0e-102 375.2 251 73.3
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 2.6e-101 372.5 243 77.0
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.7e-100 369.8 253 73.1
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 3.8e-100 368.6 253 74.3
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.3e-97 360.1 256 69.9
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.5e-96 356.7 257 68.1
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.3e-96 355.1 253 68.0
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 2.8e-95 352.4 252 69.0
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.8e-94 349.7 256 68.4
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 3.1e-94 349.0 252 70.6
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 9.0e-94 347.4 259 67.6
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.2e-93 347.1 254 66.5
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 2.0e-93 346.3 254 66.1
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 3.4e-93 345.5 257 70.0
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.6e-93 344.4 256 66.4
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 7.6e-93 344.4 256 66.0
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 7.6e-93 344.4 258 67.4
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.7e-92 343.2 259 68.3
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.8e-92 342.0 256 65.6
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 4.9e-92 341.7 250 68.4
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 4.9e-92 341.7 251 66.5
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 8.4e-92 340.9 255 66.7
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 2.5e-91 339.3 262 66.4
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 3.2e-91 339.0 259 66.0
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 3.2e-91 339.0 257 67.7
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 4.2e-91 338.6 237 70.5
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 9.3e-91 337.4 252 67.9
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.7e-90 335.9 258 66.3
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.0e-89 334.0 251 65.7
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 3.0e-89 332.4 245 70.6
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 5.6e-88 328.2 251 65.7
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.3e-87 327.0 262 64.5
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.6e-87 326.6 255 65.5
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.8e-87 325.9 257 63.8
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 4.8e-87 325.1 251 64.5
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 4.8e-87 325.1 251 64.1
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 6.2e-87 324.7 247 66.4
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 6.2e-87 324.7 255 63.1
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.1e-86 323.9 254 65.0
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.4e-86 322.8 248 63.7
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 3.1e-86 322.4 224 71.0
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 3.1e-86 322.4 261 63.2
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 4.0e-86 322.0 249 66.7
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 4.0e-86 322.0 259 64.1
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 4.0e-86 322.0 236 69.5
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.5e-85 320.1 251 64.9
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.5e-85 320.1 252 63.9
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.4e-85 318.9 247 65.2
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 4.5e-85 318.5 244 67.6
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.0e-84 317.4 247 65.6
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.0e-84 317.4 247 65.6
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.7e-84 316.6 256 61.3
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.7e-84 316.6 235 67.7
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.7e-84 316.6 235 67.7
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.2e-84 316.2 180 82.8
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.9e-84 315.8 238 66.4
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 4.9e-84 315.1 256 63.7
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.5e-84 314.7 244 63.9
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.1e-83 313.9 252 65.5
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.1e-83 313.9 252 65.5
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.1e-83 313.9 256 60.5
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.9e-83 313.2 262 61.8
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 2.5e-83 312.8 186 77.4
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 3.2e-83 312.4 256 64.1
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.2e-83 312.0 251 63.3
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.1e-83 311.2 250 64.4
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 7.1e-83 311.2 255 61.2
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 7.1e-83 311.2 219 67.6
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.2e-82 310.5 249 65.1
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 2.1e-82 309.7 179 79.9
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 4.6e-82 308.5 180 80.0
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.0e-82 308.1 250 64.0
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 6.0e-82 308.1 247 61.1
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 3.9e-81 305.4 251 61.8
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 5.1e-81 305.1 258 62.4
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 6.7e-81 304.7 247 63.2
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 6.7e-81 304.7 235 64.3
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 6.7e-81 304.7 257 61.9
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.1e-80 303.9 257 62.3
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.5e-80 302.8 255 62.4
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.5e-80 302.8 255 62.4
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 3.3e-80 302.4 257 60.3
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 7.4e-80 301.2 257 61.1
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.3e-79 300.4 257 60.7
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.3e-79 300.4 250 62.4
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 2.2e-79 299.7 260 60.4
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 3.7e-79 298.9 288 55.6
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.8e-79 298.5 216 69.0
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 8.2e-79 297.7 257 60.7
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 8.2e-79 297.7 259 61.4
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 2.4e-78 296.2 256 58.6
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 2.4e-78 296.2 222 64.4
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 3.1e-78 295.8 246 62.2
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 5.3e-78 295.0 250 60.4
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 6.9e-78 294.7 261 60.2
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 9.0e-78 294.3 220 65.5
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 9.0e-78 294.3 242 65.3
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.2e-77 293.9 255 58.8
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.0e-77 293.1 184 74.5
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 2.0e-77 293.1 228 64.0
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 2.6e-77 292.7 263 59.3
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 4.5e-77 292.0 251 61.0
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-76 290.8 184 72.8
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 6.5e-76 288.1 253 59.3
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-75 287.0 256 58.2
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.9e-75 286.6 177 74.6
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 7.2e-75 284.6 253 59.3
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 7.2e-75 284.6 250 61.6
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.0e-73 280.8 255 56.5
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.8e-73 280.0 222 61.3
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 5.1e-73 278.5 185 70.3
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 5.1e-73 278.5 256 59.4
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 9.1e-70 267.7 166 78.9
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.7e-68 263.5 231 59.7
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.9e-68 262.7 256 53.9
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.9e-67 260.0 252 56.3
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 3.2e-67 259.2 214 61.2
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.1e-66 256.5 218 59.6
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 6.1e-66 255.0 150 79.3
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.8e-65 253.4 218 59.2
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 9.7e-64 247.7 188 66.5
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.3e-63 247.3 184 65.2
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 2.8e-63 246.1 215 60.0
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.1e-62 242.7 202 60.4
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 2.9e-60 236.1 256 51.6
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 5.0e-60 235.3 170 62.9
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 2.7e-58 229.6 221 56.1
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 6.7e-57 224.9 164 63.4
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 8.8e-57 224.6 164 63.4
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.1e-56 224.2 152 71.1
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.1e-56 224.2 260 48.1
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.3e-55 220.7 254 50.0
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 2.2e-55 219.9 181 57.5
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.2e-55 219.9 143 70.6
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 6.3e-55 218.4 170 60.0
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.2e-52 209.9 171 56.1
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 7.5e-48 194.9 111 81.1
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 8.6e-36 154.8 90 78.9
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.3e-33 146.7 115 60.9
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 3.4e-32 142.9 143 53.8
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.7e-32 142.1 131 59.5
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-31 140.2 212 41.5
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 7.0e-30 135.2 84 75.0
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.1e-27 127.9 85 64.7
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.5e-27 127.5 97 68.0
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 3.3e-27 126.3 213 32.9
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 2.0e-24 117.1 78 74.4
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 4.9e-23 112.5 141 39.7
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 8.3e-23 111.7 73 71.2
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 8.3e-23 111.7 65 76.9
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 5.4e-22 109.0 63 81.0
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.6e-18 96.3 67 64.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 8.3e-15 85.1 86 48.8
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.5e-13 79.7 52 69.2
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 5.1e-12 75.9 46 71.7
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.3e-11 73.2 52 65.4
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 9.5e-11 71.6 39 79.5
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-10 71.2 51 64.7
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.4e-08 62.8 43 69.8
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.7e-07 60.8 76 43.4
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 3.7e-07 59.7 33 75.8


User provided reference genes

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