Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013392 Camellia sinensis var. sinensis HOM05D001799 ORTHO05D001655 4.7e-182 641.3 395 100.0
Rhsim01G0259600 Rhododendron simsii HOM05D001799 ORTHO05D001655 1.3e-54 218.0 239 53.1
Actinidia23705 Actinidia chinensis HOM05D001799 ORTHO05D001655 1.3e-51 208.0 242 52.9
vmacro02715 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 1.3e-51 208.0 329 42.6
CSS0002635 Camellia sinensis var. sinensis HOM05D001799 ORTHO05D001655 6.6e-51 205.7 239 54.0
Dinv43054 Davidia involucrata HOM05D001799 ORTHO05D001655 1.2e-49 201.4 237 51.5
vmacro14789 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 8.7e-43 178.7 244 46.7
Actinidia30116 Actinidia chinensis HOM05D001799 ORTHO05D001655 4.6e-36 156.4 231 46.3
GSVIVG01028449001 Vitis vinifera HOM05D001799 ORTHO05D001655 1.1e-34 151.8 247 42.1
Prupe.8G213400 Prunus persica HOM05D001799 ORTHO05D001655 9.6e-34 148.7 242 41.3
TAR633G1919 Trochodendron aralioides HOM05D001799 ORTHO05D001655 1.3e-33 148.3 251 39.0
Rhsim13G0040600 Rhododendron simsii HOM05D001799 ORTHO05D001655 4.5e-31 139.8 318 37.1
Hma1.2p1_1224F.1_g268440 Hydrangea macrophylla HOM05D001799 ORTHO05D001655 9.9e-31 138.7 225 43.1
CiPaw.03G272100 Carya illinoinensis HOM05D001799 ORTHO05D001655 3.0e-27 127.1 249 35.7
TAR349G0003 Trochodendron aralioides HOM05D001799 ORTHO05D001655 1.3e-25 121.7 250 35.6
Nitab4.5_0000392g0080 Nicotiana tabacum HOM05D001799 ORTHO05D001655 3.1e-24 117.1 274 33.9
Hma1.2p1_2051F.1_g312570 Hydrangea macrophylla HOM05D001799 ORTHO05D001655 4.0e-24 116.7 194 40.7
MD10G1174400 Malus domestica HOM05D001799 ORTHO05D001655 6.9e-24 115.9 234 38.5
Sopen09g025540 Solanum pennellii HOM05D001799 ORTHO05D001655 6.9e-24 115.9 236 36.0
Nitab4.5_0000385g0050 Nicotiana tabacum HOM05D001799 ORTHO05D001655 9.0e-24 115.5 249 35.3
Solyc09g064420.4 Solanum lycopersicum HOM05D001799 ORTHO05D001655 9.0e-24 115.5 236 35.6
Peaxi162Scf00043g02315 Petunia axillaris HOM05D001799 ORTHO05D001655 1.2e-23 115.2 255 34.9
PGSC0003DMG400007720 Solanum tuberosum HOM05D001799 ORTHO05D001655 1.2e-23 115.2 238 37.0
Atru.chr5.1957 Acer truncatum HOM05D001799 ORTHO05D001655 1.7e-22 111.3 248 36.3
Manes.12G038900 Manihot esculenta HOM05D001799 ORTHO05D001655 2.2e-22 110.9 248 35.9
Haze_24721 Corylus avellana HOM05D001799 ORTHO05D001655 1.9e-21 107.8 258 35.7
QL09p042405 Quercus lobata HOM05D001799 ORTHO05D001655 3.2e-21 107.1 243 34.6
Oeu026802.3 Olea europaea HOM05D001799 ORTHO05D001655 7.1e-21 105.9 284 34.2
MD05G1186600 Malus domestica HOM05D001799 ORTHO05D001655 2.7e-20 104.0 240 35.8
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 3.5e-20 103.6 246 34.6
Manes.13G038700 Manihot esculenta HOM05D001799 ORTHO05D001655 3.9e-19 100.1 244 34.4
Potri.002G255400 Populus trichocarpa HOM05D001799 ORTHO05D001655 1.9e-18 97.8 261 33.7
CAN.G119.8 Capsicum annuum HOM05D001799 ORTHO05D001655 2.5e-18 97.4 241 34.9
Thecc.01G247900 Theobroma cacao HOM05D001799 ORTHO05D001655 2.5e-18 97.4 246 30.9
Gorai.007G150500 Gossypium raimondii HOM05D001799 ORTHO05D001655 4.3e-18 96.7 272 31.2
Gohir.A11G134200 Gossypium hirsutum HOM05D001799 ORTHO05D001655 5.7e-18 96.3 272 31.2
FAN15G1895 Fragaria x ananassa HOM05D001799 ORTHO05D001655 2.2e-17 94.4 321 31.2
RcHm_v2.0_Chr6g0286061 Rosa chinensis HOM05D001799 ORTHO05D001655 2.2e-17 94.4 300 32.0
Duzib133G0885 Durio zibethinus HOM05D001799 ORTHO05D001655 3.7e-17 93.6 273 30.0
Duzib138G0086 Durio zibethinus HOM05D001799 ORTHO05D001655 8.2e-17 92.4 272 29.0
FvH4_2g20270 Fragaria vesca HOM05D001799 ORTHO05D001655 1.1e-16 92.0 321 30.5
Oeu039650.1 Olea europaea HOM05D001799 ORTHO05D001655 1.8e-16 91.3 277 32.1
FAN24G0159 Fragaria x ananassa HOM05D001799 ORTHO05D001655 2.4e-16 90.9 321 30.2
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 4.1e-16 90.1 265 31.7
ECA236G3571 Erigeron canadensis HOM05D001799 ORTHO05D001655 6.9e-16 89.4 194 36.6
FAN24G0550 Fragaria x ananassa HOM05D001799 ORTHO05D001655 6.9e-16 89.4 321 30.8
FAN27G1083 Fragaria x ananassa HOM05D001799 ORTHO05D001655 6.9e-16 89.4 321 30.8
TWI75G0966 Tripterygium wilfordii HOM05D001799 ORTHO05D001655 1.2e-15 88.6 259 30.9
Gohir.D11G140300 Gossypium hirsutum HOM05D001799 ORTHO05D001655 3.8e-14 83.6 272 29.8
MSTRG.18361 Avicennia marina HOM05D001799 ORTHO05D001655 6.5e-14 82.8 267 30.3
Duzib211G0692 Durio zibethinus HOM05D001799 ORTHO05D001655 1.9e-13 81.3 255 29.4
Hund05495 Selenicereus undatus HOM05D001799 ORTHO05D001655 2.5e-13 80.9 148 34.5
SalBow4G1659 Salvia bowleyana HOM05D001799 ORTHO05D001655 5.5e-13 79.7 250 32.0
TWI18G0889 Tripterygium wilfordii HOM05D001799 ORTHO05D001655 7.2e-13 79.3 301 27.2
Aqoxy5G00108 Aquilegia oxysepala HOM05D001799 ORTHO05D001655 1.2e-12 78.6 206 32.5
AUR62025422 Chenopodium quinoa HOM05D001799 ORTHO05D001655 6.1e-12 76.3 180 33.3
Nn3g19824 Nelumbo nucifera HOM05D001799 ORTHO05D001655 1.4e-11 75.1 260 28.5
Cc01_g17690 Coffea canephora HOM05D001799 ORTHO05D001655 1.8e-11 74.7 191 34.6
AUR62008817 Chenopodium quinoa HOM05D001799 ORTHO05D001655 2.3e-11 74.3 207 30.9
EL10Ac7g17710 Beta vulgaris HOM05D001799 ORTHO05D001655 3.0e-11 73.9 172 34.9
Gohir.A08G046000 Gossypium hirsutum HOM05D001799 ORTHO05D001655 3.9e-11 73.6 161 31.7
PSO764G0262 Papaver somniferum HOM05D001799 ORTHO05D001655 1.1e-10 72.0 190 35.3
Nn1g03020 Nelumbo nucifera HOM05D001799 ORTHO05D001655 2.5e-10 70.9 263 32.7
Eucgr.K01404 Eucalyptus grandis HOM05D001799 ORTHO05D001655 4.3e-10 70.1 239 28.9
HanXRQChr04g0107651 Helianthus annuus HOM05D001799 ORTHO05D001655 9.7e-10 68.9 165 32.7
COL.COLO4_20962 Corchorus olitorius HOM05D001799 ORTHO05D001655 1.7e-09 68.2 267 28.5
Glyma.19G169900 Glycine max HOM05D001799 ORTHO05D001655 2.2e-09 67.8 230 27.4
PSO832G2966 Papaver somniferum HOM05D001799 ORTHO05D001655 2.8e-09 67.4 191 35.1
Lsat_1_v5_gn_8_91040 Lactuca sativa HOM05D001799 ORTHO05D001655 6.3e-09 66.2 247 30.8
Migut.D00488 Erythranthe guttata HOM05D001799 ORTHO05D001655 1.1e-08 65.5 247 29.6
Cpa.g.sc87.53 Carica papaya HOM05D001799 ORTHO05D001655 2.4e-08 64.3 235 27.2
PGR044G0994 Punica granatum HOM05D001799 ORTHO05D001655 3.1e-08 63.9 240 30.4
Glyma.13G127600 Glycine max HOM05D001799 ORTHO05D001655 5.3e-08 63.2 225 25.3
Oeu052094.1 Olea europaea HOM05D001799 ORTHO05D001655 5.3e-08 63.2 216 28.7
Ca_08756_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 9.1e-08 62.4 42 61.9
Lsat_1_v5_gn_5_180101 Lactuca sativa HOM05D001799 ORTHO05D001655 9.1e-08 62.4 262 31.7
Gohir.D08G056500 Gossypium hirsutum HOM05D001799 ORTHO05D001655 1.2e-07 62.0 260 25.8
Gorai.004G057600 Gossypium raimondii HOM05D001799 ORTHO05D001655 1.5e-07 61.6 265 26.4
Phvul.007G153900 Phaseolus vulgaris HOM05D001799 ORTHO05D001655 2.0e-07 61.2 127 35.4
Glyma.03G168500 Glycine max HOM05D001799 ORTHO05D001655 1.0e-06 58.9 220 27.3
HanXRQChr01g0014871 Helianthus annuus HOM05D001799 ORTHO05D001655 1.0e-06 58.9 248 31.5
MBI07_g23235_MAGBIO Magnolia biondii HOM05D001799 ORTHO05D001655 2.2e-06 57.8 254 29.1
Lj2P1141T53 Lonicera japonica HOM05D001799 ORTHO05D001655 2.9e-06 57.4 178 30.9
Aqoxy1G01803 Aquilegia oxysepala HOM05D001799 ORTHO05D001655 3.8e-06 57.0 39 56.4
Aqoxy1G02019 Aquilegia oxysepala HOM05D001799 ORTHO05D001655 3.8e-06 57.0 53 52.8
Medtr1g069440 Medicago truncatula HOM05D001799 ORTHO05D001655 5.0e-06 56.6 296 25.3
CANSAT01G0634 Cannabis sativa HOM05D001799 ORTHO05D001655 6.5e-06 56.2 257 26.8
TPR.G35718 Trifolium pratense HOM05D001799 ORTHO05D001655 6.5e-06 56.2 230 26.1
arahy.Tifrunner.gnm1.ann1.2D12SM Arachis hypogaea HOM05D001799 ORTHO05D001655 8.5e-06 55.8 93 36.6


User provided reference genes

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