Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 8.5e-182 640.2 318 100.0
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 4.7e-148 528.1 326 82.8
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 8.3e-145 517.3 303 84.8
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 4.1e-144 515.0 320 80.6
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 8.9e-139 497.3 323 75.2
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.2e-138 496.9 319 76.2
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.3e-137 493.4 307 81.1
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 2.9e-137 492.3 314 77.1
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 1.1e-136 490.3 319 77.7
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 4.1e-136 488.4 318 77.7
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 7.8e-135 484.2 318 75.5
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 1.0e-134 483.8 313 75.7
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 8.6e-134 480.7 317 74.4
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 8.6e-134 480.7 320 73.8
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 3.3e-133 478.8 318 74.5
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 3.3e-133 478.8 320 74.1
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 6.2e-132 474.6 316 74.7
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 8.0e-132 474.2 320 74.1
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.1e-131 473.8 320 73.8
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.1e-131 473.8 318 73.9
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 1.8e-131 473.0 316 74.1
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 8.9e-131 470.7 320 73.1
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 8.9e-131 470.7 323 72.1
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 1.5e-130 469.9 318 73.0
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 3.4e-130 468.8 315 72.7
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 4.4e-130 468.4 322 70.8
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 4.4e-130 468.4 322 70.8
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 5.8e-130 468.0 318 71.1
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 9.8e-130 467.2 328 72.0
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 4.9e-129 464.9 327 70.9
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 4.9e-129 464.9 322 70.5
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 6.4e-129 464.5 305 74.4
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 8.3e-129 464.2 318 72.3
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 1.4e-128 463.4 320 72.8
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 5.4e-128 461.5 318 71.1
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 7.0e-128 461.1 318 71.1
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.6e-127 459.9 316 72.8
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 2.0e-127 459.5 318 72.0
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.5e-127 458.8 320 72.2
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 4.6e-127 458.4 320 71.9
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 4.6e-127 458.4 318 71.4
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 6.0e-127 458.0 318 71.1
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 7.8e-127 457.6 315 74.3
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 7.8e-127 457.6 318 71.4
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 1.0e-126 457.2 315 70.8
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.3e-126 456.8 314 71.3
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 1.3e-126 456.8 319 72.7
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.7e-126 456.4 316 69.6
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 1.7e-126 456.4 318 72.0
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 3.0e-126 455.7 319 71.8
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 3.9e-126 455.3 318 72.3
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 3.9e-126 455.3 318 72.3
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 6.6e-126 454.5 314 72.6
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.1e-125 453.8 320 71.2
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 1.9e-125 453.0 323 70.0
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 3.3e-125 452.2 318 72.0
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.2e-124 450.3 319 72.1
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.1e-124 449.5 314 72.3
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 2.1e-124 449.5 317 71.3
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.8e-124 449.1 317 69.1
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 6.2e-124 448.0 315 70.5
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.1e-123 447.2 316 69.3
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 3.1e-123 445.7 316 71.2
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 5.2e-123 444.9 318 68.9
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 2.0e-122 443.0 317 69.4
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 7.5e-122 441.0 345 65.8
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 9.9e-122 440.7 322 69.9
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.7e-121 439.9 317 68.8
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 4.9e-121 438.3 312 70.8
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 8.3e-121 437.6 324 68.8
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.1e-120 437.2 316 69.3
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 2.4e-120 436.0 324 68.5
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.4e-120 436.0 319 69.9
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 2.7e-119 432.6 319 67.1
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 2.7e-119 432.6 282 75.5
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.0e-118 430.6 317 67.2
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 1.0e-118 430.6 320 65.6
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.3e-118 430.3 322 66.8
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 3.0e-118 429.1 319 65.8
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 5.1e-118 428.3 319 65.8
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 5.1e-118 428.3 306 70.6
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 8.6e-118 427.6 313 66.1
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 1.1e-117 427.2 320 65.9
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.2e-116 423.7 313 65.5
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 1.6e-116 423.3 322 65.5
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 2.4e-115 419.5 314 64.6
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 2.4e-115 419.5 315 67.0
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 3.4e-114 415.6 313 64.2
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 1.3e-113 413.7 338 63.0
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 8.1e-108 394.4 331 61.6
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.7e-105 386.7 318 62.9
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 2.2e-105 386.3 377 56.5
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 3.5e-103 379.0 311 63.7
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.0e-102 377.5 301 64.1
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 5.1e-102 375.2 238 78.6
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 2.1e-100 369.8 282 65.6
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 4.0e-99 365.5 306 63.1
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 5.8e-98 361.7 317 60.6
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.1e-96 357.5 234 73.9
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.5e-95 352.4 309 57.6
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 1.5e-93 347.1 308 58.1
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 2.4e-91 339.7 308 55.2
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 4.5e-90 335.5 308 55.2
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 4.5e-90 335.5 310 55.8
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 7.1e-88 328.2 284 60.9
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 2.6e-82 309.7 236 66.5
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 1.0e-78 297.7 351 47.6
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 9.0e-75 284.6 191 70.7
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 5.9e-74 282.0 240 59.2
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 5.0e-73 278.9 211 70.6
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.9e-72 276.9 197 68.0
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 7.2e-72 275.0 187 72.7
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 9.7e-69 264.6 336 44.9
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.2e-58 231.1 237 59.5
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.6e-53 213.4 161 67.7
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 2.0e-50 203.8 159 63.5
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 4.5e-50 202.6 224 47.8
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 4.5e-50 202.6 192 61.5
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 9.7e-45 184.9 291 40.2
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 2.2e-44 183.7 114 75.4
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 4.8e-36 156.0 339 35.4
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 4.1e-35 152.9 310 37.7
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 4.7e-31 139.4 124 58.9
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 2.3e-25 120.6 121 57.9
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 1.6e-23 114.4 164 45.1
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 3.6e-23 113.2 104 60.6
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 5.2e-22 109.4 121 52.9
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 4.4e-21 106.3 120 46.7
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 7.5e-21 105.5 83 66.3
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 1.4e-19 101.3 69 71.0
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 3.2e-19 100.1 119 47.9
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 3.2e-19 100.1 75 68.0
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 7.0e-19 99.0 70 68.6
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.5e-18 96.7 152 37.5
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.0e-17 92.8 62 75.8
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 2.1e-15 87.4 81 60.5
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.2e-13 81.6 89 50.6
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 5.8e-13 79.3 60 70.0
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.6e-10 71.2 83 49.4
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 8.1e-07 58.9 54 55.6
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 1.4e-06 58.2 44 70.5
A02p37740 Brassica napus HOM05D026193 ORTHO05D028104 2.3e-06 57.4 165 30.9
BraA02t08756Z Brassica rapa HOM05D026193 ORTHO05D028104 4.0e-06 56.6 165 30.9


User provided reference genes

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