Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 5.7e-231 803.9 409 100.0
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 4.1e-181 638.3 403 78.9
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 1.1e-178 630.2 394 80.2
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 1.2e-169 600.1 400 76.2
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 4.2e-157 558.5 400 69.2
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 5.1e-155 551.6 402 69.7
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 1.9e-154 549.7 402 70.1
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 7.4e-154 547.7 401 70.1
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 4.8e-153 545.0 398 69.3
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 1.4e-152 543.5 397 68.5
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 2.2e-150 536.2 400 66.5
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 1.9e-149 533.1 391 67.3
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 5.5e-149 531.6 395 66.8
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 1.6e-148 530.0 395 66.6
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 2.1e-148 529.6 400 67.2
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 5.1e-147 525.0 399 66.2
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 7.4e-146 521.2 379 69.1
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.8e-145 519.2 403 67.5
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 9.0e-144 514.2 403 66.7
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.5e-143 513.5 398 65.6
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.0e-143 513.1 386 66.1
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 7.6e-143 511.1 387 66.4
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.3e-142 510.4 396 63.9
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 2.9e-142 509.2 406 63.5
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 8.4e-142 507.7 427 63.9
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 1.1e-141 507.3 397 64.7
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 1.9e-141 506.5 399 64.7
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 7.1e-141 504.6 429 63.2
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 1.6e-140 503.4 394 66.2
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 1.6e-140 503.4 392 66.8
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 6.1e-140 501.5 403 62.8
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 7.9e-140 501.1 384 65.4
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 7.9e-140 501.1 388 65.2
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.0e-139 500.7 395 64.3
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 3.9e-139 498.8 396 62.4
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 5.1e-139 498.4 396 62.1
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 6.7e-139 498.0 406 61.8
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 2.5e-138 496.1 393 64.9
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 2.5e-138 496.1 406 62.8
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 5.7e-138 495.0 409 60.6
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 3.7e-137 492.3 391 63.2
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 3.1e-136 489.2 396 63.4
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 5.3e-136 488.4 396 61.1
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 1.5e-135 486.9 386 64.5
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.5e-135 486.9 396 60.9
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 1.5e-135 486.9 404 60.4
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 7.7e-135 484.6 395 62.8
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 2.2e-134 483.0 391 61.9
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 3.8e-134 482.3 388 64.7
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 1.1e-133 480.7 390 63.3
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 7.2e-133 478.0 388 63.7
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 1.2e-132 477.2 385 64.7
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 1.8e-131 473.4 399 61.7
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 3.9e-131 472.2 387 63.3
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 5.1e-131 471.9 375 63.5
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 2.2e-129 466.5 383 63.4
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 2.4e-128 463.0 425 59.5
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 2.4e-128 463.0 430 56.5
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.5e-127 460.3 423 59.8
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 1.5e-127 460.3 393 60.1
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.0e-126 457.6 323 71.5
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 3.2e-125 452.6 422 56.4
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 7.2e-125 451.4 392 58.2
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 9.4e-125 451.1 357 63.6
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 2.3e-123 446.4 392 58.2
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 2.6e-122 443.0 393 56.2
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 2.2e-121 439.9 412 59.0
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 2.9e-118 429.5 406 55.7
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 6.7e-115 418.3 330 66.7
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 6.3e-113 411.8 396 53.8
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 1.1e-112 411.0 383 56.9
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 7.7e-111 404.8 384 58.9
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 1.9e-109 400.2 286 72.4
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 7.2e-109 398.3 311 66.2
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 2.1e-108 396.7 379 54.1
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.4e-107 394.0 376 55.1
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 8.8e-107 391.3 395 52.4
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 2.6e-106 389.8 391 53.2
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 3.4e-106 389.4 387 54.0
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 5.7e-106 388.7 404 50.5
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 4.8e-105 385.6 387 53.0
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 1.4e-104 384.0 395 54.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 4.1e-104 382.5 378 53.4
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 9.1e-104 381.3 387 53.5
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 4.5e-103 379.0 387 52.7
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 5.0e-102 375.6 392 52.0
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 8.5e-102 374.8 392 52.6
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 8.5e-102 374.8 392 52.0
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 5.5e-101 372.1 392 52.3
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 7.2e-101 371.7 383 51.2
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 2.7e-100 369.8 392 51.5
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 6.1e-100 368.6 392 52.0
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 6.8e-99 365.2 336 55.1
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 6.8e-99 365.2 391 51.2
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.4e-98 362.5 336 54.5
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 1.0e-91 341.3 414 48.1
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 6.8e-91 338.6 388 50.0
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 3.6e-84 316.2 334 52.7
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 6.0e-79 298.9 311 52.4
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 5.0e-78 295.8 307 53.7
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 6.6e-78 295.4 377 44.3
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 1.2e-74 284.6 392 43.6
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.0e-74 283.9 356 47.2
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 1.3e-73 281.2 320 47.8
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 3.1e-67 260.0 389 41.1
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 8.1e-60 235.3 364 40.7
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.6e-58 230.3 251 47.8
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 2.9e-57 226.9 404 37.6
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 1.1e-53 214.9 336 37.2
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.7e-46 191.0 187 54.0
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 7.1e-40 169.1 196 50.5
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.7e-39 167.2 151 53.0
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 1.0e-38 165.2 385 34.0
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.5e-37 161.4 172 49.4
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 4.0e-35 153.3 176 53.4
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 4.0e-35 153.3 176 53.4
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.5e-34 149.8 111 64.0
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 7.6e-34 149.1 162 51.9
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.3e-33 148.3 357 30.3
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 3.2e-32 143.7 73 89.0
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 5.5e-32 142.9 346 31.5
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 3.0e-30 137.1 380 30.0
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 7.4e-29 132.5 123 52.0
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 1.6e-28 131.3 197 40.6
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.5e-26 124.8 70 84.3
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 5.8e-26 122.9 84 75.0
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 8.4e-25 119.0 87 72.4
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 9.7e-21 105.5 78 64.1
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.2e-20 104.4 120 50.8
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 4.1e-19 100.1 109 55.0
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.9e-17 94.0 77 61.0
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.9e-17 94.0 77 61.0
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 4.2e-08 63.5 68 51.5
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 2.1e-07 61.2 60 63.3
QL04p046160 Quercus lobata HOM05D005911 ORTHO05D338257 3.6e-07 60.5 68 48.5
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 5.1e-06 56.6 318 22.0


User provided reference genes

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