Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1661.7 836 100.0
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1385.2 803 86.7
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1380.5 814 85.3
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1380.2 803 86.9
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1380.2 803 85.8
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1377.8 803 86.4
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1374.0 803 85.9
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1369.4 802 84.9
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1367.8 803 85.9
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1365.1 803 85.4
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1364.7 803 85.3
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1364.0 803 84.8
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1362.8 803 85.3
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1362.4 803 84.6
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1362.1 803 85.2
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1362.1 815 84.3
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1360.9 814 83.8
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1360.5 803 85.7
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1358.2 803 84.3
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1357.4 803 84.8
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1355.1 803 84.8
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1355.1 803 84.9
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1354.0 805 84.3
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1353.6 803 85.3
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1353.2 810 83.6
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1352.8 802 84.3
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1351.3 803 84.3
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1350.1 829 81.9
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1345.5 803 84.1
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1345.1 803 84.1
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1343.6 803 83.4
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1342.8 800 83.1
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1338.9 803 83.9
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1338.9 802 83.3
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1338.6 803 83.8
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1337.8 832 82.0
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1336.6 803 84.3
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1335.5 802 82.9
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1335.1 807 82.9
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1335.1 836 81.3
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1334.7 803 83.1
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1332.8 803 82.8
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1332.4 803 83.2
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1330.1 806 83.6
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1328.5 803 83.3
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1327.4 819 81.8
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1327.0 803 82.8
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1326.6 803 83.3
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1325.8 803 81.9
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1325.1 803 82.3
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1323.9 822 80.9
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1322.4 803 82.2
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1322.4 803 81.7
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1322.0 803 82.6
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1319.3 803 82.1
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1319.3 803 82.4
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1318.5 803 82.3
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1317.0 813 81.3
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1317.0 813 81.3
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1316.6 803 82.4
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1314.3 813 81.2
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1312.4 802 82.7
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1312.4 803 82.3
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1310.4 814 80.6
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1310.0 803 81.7
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1308.1 813 80.8
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1307.7 803 81.1
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1306.6 792 83.0
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1305.4 788 82.6
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1305.0 803 81.4
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1304.7 824 79.5
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1304.7 824 79.5
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1304.7 803 81.2
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1304.3 803 81.1
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1303.9 824 79.6
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1302.7 803 81.1
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1302.3 827 79.2
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1302.0 803 81.1
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1302.0 774 84.2
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1301.6 803 80.7
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1301.6 824 79.4
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1300.4 814 80.3
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1299.6 803 81.1
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1299.6 803 80.1
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1298.5 803 80.2
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1298.1 803 81.1
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1297.7 814 80.1
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1297.3 788 82.4
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1296.6 814 80.1
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1296.6 814 80.1
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1296.6 773 83.4
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1295.4 803 80.9
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1294.6 811 81.0
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1294.3 788 82.5
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1293.9 804 80.2
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1292.7 855 78.1
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1292.3 803 80.0
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1290.8 821 79.5
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1290.4 784 82.8
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1290.0 803 79.6
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1285.8 784 82.9
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1283.1 788 82.2
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1280.8 823 80.1
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1280.4 802 81.9
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1273.1 788 80.7
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1269.2 812 79.7
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1268.1 813 83.1
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1264.2 820 77.6
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1263.8 815 77.8
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1261.9 830 77.5
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1259.6 803 78.1
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1250.0 774 79.8
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1241.5 803 79.6
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1236.5 784 78.1
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1233.4 803 79.0
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1231.9 805 79.1
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1224.5 774 78.3
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1220.7 803 75.6
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1219.1 704 84.8
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1218.0 806 74.7
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1217.6 803 75.3
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1216.1 803 75.1
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1215.3 803 77.6
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1186.8 715 83.2
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1176.0 811 74.5
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1169.8 830 73.0
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1154.8 800 75.4
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1131.3 809 73.9
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1101.7 703 78.1
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 3.4e-307 1058.1 660 78.9
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 5.3e-300 1034.2 787 65.9
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.0e-298 1030.0 808 64.4
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 8.8e-295 1016.9 803 67.4
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 2.0e-278 962.6 563 82.6
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 2.3e-263 912.5 831 57.9
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 2.5e-257 892.5 511 84.3
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 5.6e-249 864.8 546 79.7
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 1.6e-235 820.1 818 54.3
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.8e-198 695.3 450 81.1
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.7e-195 686.4 426 83.6
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.7e-173 614.0 435 72.4
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 3.6e-171 606.3 744 48.1
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 4.4e-169 599.4 400 77.8
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.8e-151 540.8 381 71.9
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 5.4e-151 539.3 440 64.8
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 4.1e-127 459.9 364 64.8
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.7e-125 454.5 268 83.2
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-104 384.4 318 64.8
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 9.3e-103 379.0 226 81.9
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 2.7e-86 324.3 258 64.7
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 1.0e-85 322.4 220 74.1
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.3e-76 290.4 353 47.6
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 6.3e-67 260.0 227 63.0
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 3.0e-61 241.1 216 59.7
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 9.1e-50 203.0 140 75.7
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 2.0e-44 185.3 119 76.5
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-39 169.5 268 40.7
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 9.5e-31 139.8 81 85.2
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.0e-29 136.3 91 70.3
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.3e-29 135.2 112 65.2
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 5.7e-28 130.6 83 78.3
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 2.1e-22 112.1 95 65.3
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 6.1e-22 110.5 84 72.6
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 2.0e-20 105.5 376 27.4
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 3.2e-18 98.2 130 49.2
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 7.0e-18 97.1 56 75.0
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 5.8e-12 77.4 49 77.6
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 9.8e-12 76.6 46 80.4
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.1e-10 73.2 48 72.9
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 3.2e-10 71.6 57 64.9
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 3.5e-09 68.2 74 50.0
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.0e-08 66.6 43 72.1
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 6.6e-08 63.9 43 76.7


User provided reference genes

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