Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 3.5e-129 464.9 230 100.0
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 7.2e-74 281.2 248 62.5
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 1.6e-73 280.0 267 58.4
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 2.7e-73 279.3 219 66.2
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 3.0e-72 275.8 236 63.6
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 1.3e-70 270.4 234 62.0
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 7.0e-69 264.6 261 58.2
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 9.1e-69 264.2 232 61.2
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 1.7e-67 260.0 245 59.6
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 2.3e-67 259.6 243 60.9
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 3.8e-67 258.8 246 59.8
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 8.6e-67 257.7 245 58.4
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.1e-66 257.3 244 57.4
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 2.5e-66 256.1 235 59.1
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 4.2e-66 255.4 249 57.8
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 7.2e-66 254.6 242 57.9
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 7.2e-66 254.6 245 58.4
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 7.2e-66 254.6 245 58.4
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 9.5e-66 254.2 243 58.8
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 1.2e-65 253.8 245 57.6
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 1.6e-65 253.4 239 59.0
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.1e-65 253.1 245 58.4
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 2.1e-65 253.1 243 58.4
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 2.8e-65 252.7 239 57.7
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 2.8e-65 252.7 247 57.1
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 4.7e-65 251.9 242 59.5
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 8.0e-65 251.1 237 59.1
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 1.4e-64 250.4 252 56.0
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 1.8e-64 250.0 239 58.2
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 3.0e-64 249.2 243 57.2
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 3.0e-64 249.2 245 55.9
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 3.0e-64 249.2 250 54.8
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 3.0e-64 249.2 237 59.1
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 4.0e-64 248.8 244 57.4
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 6.8e-64 248.1 245 58.0
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 6.8e-64 248.1 255 54.5
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 1.2e-63 247.3 251 54.6
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.2e-63 247.3 236 59.7
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 1.2e-63 247.3 237 58.6
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 1.2e-63 247.3 267 53.2
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 2.0e-63 246.5 246 56.5
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 2.0e-63 246.5 249 55.4
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 2.6e-63 246.1 249 55.4
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 2.6e-63 246.1 278 52.2
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 3.4e-63 245.7 251 55.0
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 4.4e-63 245.4 243 58.0
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 5.7e-63 245.0 243 56.8
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 7.5e-63 244.6 251 58.6
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 9.8e-63 244.2 245 57.1
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 1.3e-62 243.8 251 53.8
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 1.3e-62 243.8 237 59.5
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 1.3e-62 243.8 243 57.6
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 1.7e-62 243.4 242 56.6
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 1.7e-62 243.4 246 54.1
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 3.7e-62 242.3 253 53.8
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 3.7e-62 242.3 245 56.3
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 3.7e-62 242.3 243 57.2
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 3.7e-62 242.3 259 53.7
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 8.3e-62 241.1 243 57.2
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 1.1e-61 240.7 239 55.6
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.1e-61 240.7 245 55.9
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 1.4e-61 240.4 248 54.4
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 1.8e-61 240.0 233 57.5
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 1.8e-61 240.0 237 57.8
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 2.4e-61 239.6 245 56.3
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 3.1e-61 239.2 252 54.8
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 3.1e-61 239.2 237 57.4
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 3.1e-61 239.2 247 54.7
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 3.1e-61 239.2 248 54.0
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 5.4e-61 238.4 248 53.2
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 5.4e-61 238.4 244 55.7
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.6e-60 236.9 245 56.7
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 1.6e-60 236.9 273 52.0
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 2.0e-60 236.5 246 56.1
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 2.7e-60 236.1 259 52.1
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 3.5e-60 235.7 251 54.6
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 4.5e-60 235.3 245 53.5
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 5.9e-60 235.0 240 55.0
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 7.8e-60 234.6 243 54.7
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 1.0e-59 234.2 253 53.0
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 1.3e-59 233.8 249 53.8
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 2.3e-59 233.0 249 53.8
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 5.0e-59 231.9 243 51.9
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 8.6e-59 231.1 249 53.4
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 8.6e-59 231.1 268 51.1
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 1.5e-58 230.3 251 52.2
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 1.5e-58 230.3 251 53.4
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 2.5e-58 229.6 251 53.4
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 2.5e-58 229.6 228 56.6
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 7.3e-58 228.0 240 54.2
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.6e-57 226.9 241 53.5
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.4e-56 223.8 246 53.7
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 3.1e-56 222.6 270 48.9
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 8.9e-56 221.1 246 50.8
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 2.6e-55 219.5 246 50.8
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 3.2e-53 212.6 240 53.3
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 3.5e-52 209.1 240 50.4
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 3.5e-52 209.1 245 49.8
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 6.0e-52 208.4 241 49.8
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 6.0e-52 208.4 239 51.0
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 1.7e-51 206.8 237 50.6
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.1e-50 204.1 244 50.4
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 1.1e-50 204.1 232 50.0
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 3.3e-50 202.6 221 52.5
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 9.5e-50 201.1 216 53.7
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 9.5e-50 201.1 240 47.1
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 9.5e-50 201.1 245 46.9
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.2e-49 200.7 234 49.6
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.6e-49 200.3 240 48.8
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 2.3e-48 196.4 232 48.7
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 3.1e-48 196.1 232 49.1
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 2.6e-47 193.0 228 46.9
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 2.4e-45 186.4 232 47.4
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 3.5e-44 182.6 239 47.7
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 7.8e-44 181.4 185 56.8
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 1.5e-42 177.2 242 44.2
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 2.5e-42 176.4 244 44.7
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 5.6e-42 175.3 128 65.6
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 9.5e-42 174.5 137 65.0
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 4.7e-41 172.2 249 44.6
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 5.4e-37 158.7 243 44.0
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 1.2e-36 157.5 276 39.1
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 7.8e-36 154.8 102 70.6
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 1.3e-35 154.1 128 59.4
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 2.1e-33 146.7 234 39.7
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 4.4e-31 139.0 190 43.2
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 1.1e-29 134.4 116 57.8
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 1.3e-27 127.5 190 44.2
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 1.7e-27 127.1 72 79.2
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 2.3e-27 126.7 286 33.9
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 1.1e-26 124.4 115 56.5
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.5e-26 124.0 126 53.2
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 2.5e-26 123.2 177 46.3
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 6.2e-25 118.6 85 65.9
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 7.6e-23 111.7 101 55.4
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 2.9e-22 109.8 298 29.9
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 4.9e-22 109.0 243 35.8
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 6.6e-19 98.6 137 45.3
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 5.6e-18 95.5 126 47.6
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 1.8e-16 90.5 52 80.8
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.8e-16 90.5 73 58.9
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 5.8e-15 85.5 53 71.7
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 9.3e-13 78.2 78 53.8
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 8.4e-06 55.1 56 51.8


User provided reference genes

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