Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 3.8e-51 204.5 103 100.0
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 7.8e-28 127.1 110 65.5
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.3e-27 126.3 107 64.5
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 1.7e-27 125.9 107 63.6
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 9.5e-26 120.2 107 63.6
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 9.5e-26 120.2 101 63.4
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 4.0e-24 114.8 104 60.6
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 6.8e-24 114.0 103 60.2
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 6.8e-24 114.0 103 61.2
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 6.8e-24 114.0 103 59.2
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 8.9e-24 113.6 103 61.2
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.2e-23 113.2 101 62.4
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 2.6e-23 112.1 107 59.8
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 4.4e-23 111.3 107 60.7
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 7.6e-23 110.5 107 58.9
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 7.6e-23 110.5 106 59.4
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 2.2e-22 109.0 107 60.7
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 6.4e-22 107.5 101 56.4
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 6.4e-22 107.5 98 59.2
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 8.4e-22 107.1 98 57.1
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 8.4e-22 107.1 103 57.3
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 4.2e-21 104.8 106 57.5
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 5.4e-21 104.4 103 57.3
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 7.1e-21 104.0 87 70.1
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 2.1e-20 102.4 105 57.1
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.1e-20 102.4 107 57.0
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.7e-20 102.1 106 57.5
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 2.3e-19 99.0 102 54.9
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 3.9e-19 98.2 98 58.2
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 5.1e-19 97.8 112 55.4
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 5.1e-19 97.8 97 57.7
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 8.7e-19 97.1 103 55.3
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 8.7e-19 97.1 92 59.8
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 8.7e-19 97.1 103 52.4
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 1.1e-18 96.7 104 55.8
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.1e-18 96.7 103 55.3
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 1.5e-18 96.3 103 52.4
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 3.3e-18 95.1 103 51.5
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 4.3e-18 94.7 99 54.5
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.6e-18 94.4 99 53.5
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.6e-18 94.4 99 53.5
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 7.3e-18 94.0 163 43.6
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 9.6e-18 93.6 73 67.1
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 9.6e-18 93.6 100 52.0
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 1.3e-17 93.2 68 69.1
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 2.1e-17 92.4 100 48.0
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 3.6e-17 91.7 99 46.5
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 3.6e-17 91.7 111 49.5
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 4.8e-17 91.3 98 48.0
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 4.8e-17 91.3 89 60.7
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 4.8e-17 91.3 104 52.9
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 4.8e-17 91.3 111 51.4
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 8.1e-17 90.5 105 53.3
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 8.1e-17 90.5 102 48.0
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 1.1e-16 90.1 100 50.0
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 1.1e-16 90.1 111 50.5
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.4e-16 89.7 86 58.1
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 1.8e-16 89.4 99 46.5
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.8e-16 89.4 110 54.5
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 2.4e-16 89.0 98 45.9
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 2.4e-16 89.0 111 50.5
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 3.1e-16 88.6 102 52.0
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 5.3e-16 87.8 106 49.1
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 5.3e-16 87.8 106 50.0
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 9.0e-16 87.0 104 46.2
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 9.0e-16 87.0 102 51.0
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 2.6e-15 85.5 72 61.1
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 4.4e-15 84.7 55 70.9
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 4.4e-15 84.7 86 59.3
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 4.4e-15 84.7 92 54.3
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 4.4e-15 84.7 92 54.3
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 5.8e-15 84.3 106 43.4
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 9.9e-15 83.6 98 41.8
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.2e-14 82.4 105 49.5
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 2.2e-14 82.4 105 49.5
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 2.2e-14 82.4 107 52.3
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 2.2e-14 82.4 106 50.0
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 4.9e-14 81.3 103 49.5
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 6.4e-14 80.9 103 48.5
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 8.4e-14 80.5 101 44.6
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 8.4e-14 80.5 105 48.6
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 1.1e-13 80.1 102 48.0
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 1.4e-13 79.7 97 52.6
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.9e-13 79.3 100 48.0
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 9.3e-13 77.0 113 48.7
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 1.6e-12 76.3 68 57.4
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 1.6e-12 76.3 68 57.4
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 1.6e-12 76.3 128 38.3
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 2.1e-12 75.9 47 78.7
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 4.6e-12 74.7 68 55.9
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 4.6e-12 74.7 103 44.7
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 4.6e-12 74.7 83 55.4
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 6.0e-12 74.3 67 55.2
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 6.0e-12 74.3 127 41.7
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.8e-12 73.9 76 56.6
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 7.8e-12 73.9 103 45.6
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 1.7e-11 72.8 52 65.4
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 3.0e-11 72.0 105 43.8
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 3.0e-11 72.0 92 47.8
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 8.7e-11 70.5 84 48.8
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 1.1e-10 70.1 104 45.2
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.1e-10 70.1 83 48.2
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 1.5e-10 69.7 52 61.5
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 1.5e-10 69.7 52 61.5
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 1.5e-10 69.7 52 61.5
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 1.5e-10 69.7 52 61.5
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 1.5e-10 69.7 78 50.0
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 1.9e-10 69.3 52 59.6
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 1.9e-10 69.3 52 63.5
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 1.9e-10 69.3 52 59.6
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 1.9e-10 69.3 52 63.5
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 1.9e-10 69.3 52 59.6
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 2.5e-10 68.9 106 49.1
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 3.3e-10 68.6 106 49.1
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 7.3e-10 67.4 51 60.8
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 7.3e-10 67.4 81 49.4
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 2.1e-09 65.9 81 48.1
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 3.6e-09 65.1 54 63.0
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 4.8e-09 64.7 84 48.8
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 4.8e-09 64.7 75 52.0
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 6.2e-09 64.3 80 43.8
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 6.2e-09 64.3 88 48.9
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 1.1e-08 63.5 53 60.4
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 1.8e-08 62.8 77 46.8
unitig_26.g9548 Utricularia gibba HOM05D005475 ORTHO05D006575 1.8e-08 62.8 46 67.4
Ah.04g155370 Amaranthus hybridus HOM05D005475 ORTHO05D006575 9.0e-08 60.5 106 47.2
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 1.5e-07 59.7 65 52.3
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 1.5e-07 59.7 65 52.3
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 1.5e-07 59.7 65 52.3
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 2.6e-07 58.9 67 52.2
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 2.6e-07 58.9 48 60.4
HPP92_007739 Vanilla planifolia HOM05D005475 ORTHO05D006575 4.5e-07 58.2 39 69.2
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.6e-07 57.4 69 49.3
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 7.6e-07 57.4 56 57.1
EL10Ac3g04956 Beta vulgaris HOM05D005475 ORTHO05D006575 9.9e-07 57.0 90 47.8
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 9.9e-07 57.0 66 51.5
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 9.9e-07 57.0 75 48.0
Migut.G00489 Erythranthe guttata HOM05D005475 ORTHO05D006575 8.4e-06 53.9 52 59.6


User provided reference genes

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