Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 9.0e-72 273.5 137 100.0
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.3e-50 201.8 162 72.2
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 8.8e-35 150.6 110 74.5
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.5e-34 149.8 110 72.7
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 5.7e-34 147.9 110 74.5
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 1.3e-33 146.7 110 71.8
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.1e-32 143.7 110 71.8
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 1.2e-31 140.2 110 71.8
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 5.9e-31 137.9 110 70.9
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.0e-30 137.1 110 67.3
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 1.3e-30 136.7 109 68.8
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 1.3e-30 136.7 109 68.8
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 3.8e-30 135.2 110 69.1
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 5.0e-30 134.8 110 70.0
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 6.5e-30 134.4 109 67.9
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 6.5e-30 134.4 110 68.2
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 6.5e-30 134.4 110 70.0
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.1e-29 133.7 108 65.7
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 1.4e-29 133.3 110 65.5
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.9e-29 132.9 110 69.1
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 2.5e-29 132.5 110 63.6
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.2e-29 132.1 129 62.0
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 3.2e-29 132.1 110 64.5
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 7.2e-29 131.0 109 65.1
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 9.4e-29 130.6 109 65.1
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 9.4e-29 130.6 110 68.2
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 9.4e-29 130.6 110 68.2
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 9.4e-29 130.6 109 64.2
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 1.2e-28 130.2 110 67.3
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 2.7e-28 129.0 110 67.3
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 3.6e-28 128.6 109 64.2
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 3.6e-28 128.6 133 58.6
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 4.7e-28 128.3 110 65.5
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 8.0e-28 127.5 112 61.6
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 1.0e-27 127.1 110 61.8
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 1.0e-27 127.1 110 60.9
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.4e-27 126.7 110 62.7
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 2.3e-27 125.9 109 61.5
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 2.3e-27 125.9 110 61.8
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 3.9e-27 125.2 110 60.0
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 3.9e-27 125.2 110 60.9
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 5.2e-27 124.8 111 62.2
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 6.7e-27 124.4 110 61.8
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 6.7e-27 124.4 110 63.6
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 6.7e-27 124.4 110 60.9
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 6.7e-27 124.4 110 60.0
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 6.7e-27 124.4 109 62.4
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.1e-26 123.6 109 62.4
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 2.6e-26 122.5 110 59.1
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 4.4e-26 121.7 118 60.2
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 5.7e-26 121.3 110 64.5
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 5.7e-26 121.3 110 60.9
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 5.7e-26 121.3 110 58.2
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 1.3e-25 120.2 110 59.1
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 1.3e-25 120.2 109 60.6
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 1.7e-25 119.8 110 61.8
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 1.7e-25 119.8 110 58.2
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 1.7e-25 119.8 110 57.3
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 1.7e-25 119.8 110 57.3
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 2.2e-25 119.4 110 63.6
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 2.2e-25 119.4 109 61.5
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 2.2e-25 119.4 110 56.4
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 2.8e-25 119.0 110 59.1
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 3.7e-25 118.6 108 59.3
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 3.7e-25 118.6 110 59.1
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 4.8e-25 118.2 109 58.7
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 8.2e-25 117.5 110 55.5
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.8e-24 116.3 106 62.3
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.8e-24 116.3 98 65.3
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.8e-24 116.3 98 65.3
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 2.4e-24 115.9 107 59.8
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 2.4e-24 115.9 110 60.0
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 3.1e-24 115.5 108 55.6
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 7.0e-24 114.4 110 60.9
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 9.1e-24 114.0 110 59.1
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 2.0e-23 112.8 109 56.0
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 2.0e-23 112.8 111 57.7
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 2.6e-23 112.5 110 51.8
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 2.6e-23 112.5 108 57.4
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 3.5e-23 112.1 107 57.9
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 5.9e-23 111.3 108 53.7
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 7.7e-23 110.9 110 56.4
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 1.3e-22 110.2 107 56.1
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.3e-22 110.2 107 56.1
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.7e-22 109.8 107 56.1
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.7e-22 109.8 108 53.7
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.7e-22 109.8 108 53.7
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 1.7e-22 109.8 107 56.1
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.9e-22 109.0 112 59.8
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 3.8e-22 108.6 112 59.8
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 5.0e-22 108.2 109 54.1
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 5.0e-22 108.2 71 81.7
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 8.5e-22 107.5 107 55.1
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 1.9e-21 106.3 102 57.8
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 3.2e-21 105.5 118 49.2
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 7.2e-21 104.4 109 54.1
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 7.2e-21 104.4 93 61.3
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 1.6e-20 103.2 110 53.6
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 1.6e-20 103.2 107 53.3
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 2.7e-20 102.4 109 49.5
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 6.1e-20 101.3 110 57.3
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 8.0e-20 100.9 109 49.5
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 8.0e-20 100.9 108 51.9
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 1.0e-19 100.5 71 77.5
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 3.0e-19 99.0 102 58.8
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 6.8e-19 97.8 101 52.5
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 1.5e-18 96.7 109 47.7
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 1.5e-18 96.7 109 47.7
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 1.5e-18 96.7 109 47.7
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.0e-18 96.3 108 55.6
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 2.6e-18 95.9 109 47.7
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 2.6e-18 95.9 109 47.7
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 3.4e-18 95.5 109 46.8
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 4.4e-18 95.1 102 52.0
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 5.7e-18 94.7 81 70.4
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 7.5e-18 94.4 109 53.2
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 9.7e-18 94.0 95 60.0
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 9.7e-18 94.0 109 47.7
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 1.7e-17 93.2 109 47.7
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 2.2e-17 92.8 109 47.7
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 2.2e-17 92.8 109 45.9
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 4.8e-17 91.7 109 46.8
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 4.8e-17 91.7 109 46.8
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 6.3e-17 91.3 88 60.2
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 6.3e-17 91.3 109 46.8
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 6.3e-17 91.3 109 46.8
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 8.3e-17 90.9 109 46.8
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 8.3e-17 90.9 101 52.5
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 1.1e-16 90.5 109 46.8
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 1.1e-16 90.5 109 46.8
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 1.1e-16 90.5 109 46.8
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 3.1e-16 89.0 117 42.7
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 3.1e-16 89.0 109 48.6
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 4.1e-16 88.6 109 45.9
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.0e-15 86.3 120 46.7
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 3.5e-15 85.5 109 45.9
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 5.9e-15 84.7 108 48.1
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 7.7e-15 84.3 109 51.4
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 6.5e-14 81.3 65 67.7
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.9e-13 79.7 107 40.2
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 1.9e-13 79.7 69 60.9
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 2.1e-12 76.3 110 41.8
Actinidia16726 Actinidia chinensis HOM05D004223 ORTHO05D004792 8.0e-12 74.3 54 68.5
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.0e-11 73.9 60 70.0
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 2.3e-11 72.8 64 56.2
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.6e-10 69.3 107 39.3
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 2.8e-09 65.9 112 40.2
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.1e-08 63.9 107 38.3
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.1e-08 62.0 71 50.7
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 5.4e-08 61.6 60 60.0
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.2e-07 60.5 71 49.3
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.5e-07 58.9 56 64.3
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 2.3e-06 56.2 46 56.5


User provided reference genes

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