Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 9.4e-42 172.9 78 100.0
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 4.9e-14 80.9 70 55.7
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 8.3e-14 80.1 63 57.1
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 1.4e-13 79.3 75 54.7
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 1.8e-13 79.0 64 56.2
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 7.0e-13 77.0 76 55.3
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 9.2e-13 76.6 75 49.3
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 2.0e-12 75.5 94 40.4
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 2.7e-12 75.1 75 54.7
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.5e-12 74.7 73 53.4
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 4.6e-12 74.3 73 52.1
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.6e-12 74.3 73 52.1
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 5.9e-12 73.9 64 51.6
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 5.9e-12 73.9 75 52.0
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 7.8e-12 73.6 73 53.4
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 7.8e-12 73.6 73 50.7
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 2.3e-11 72.0 73 47.9
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 3.9e-11 71.2 74 45.9
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 3.9e-11 71.2 73 47.9
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 8.6e-11 70.1 77 49.4
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.1e-10 69.7 64 53.1
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.9e-10 68.9 66 53.0
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 1.9e-10 68.9 66 53.0
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.9e-10 68.9 66 50.0
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 2.5e-10 68.6 64 48.4
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 2.5e-10 68.6 66 48.5
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 3.3e-10 68.2 66 50.0
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 3.3e-10 68.2 63 47.6
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.3e-10 68.2 73 50.7
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 3.3e-10 68.2 75 49.3
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 3.3e-10 68.2 75 49.3
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 3.3e-10 68.2 75 49.3
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 4.3e-10 67.8 66 51.5
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 4.3e-10 67.8 73 47.9
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 4.3e-10 67.8 63 47.6
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.3e-10 67.8 71 45.1
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 4.3e-10 67.8 70 48.6
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 4.3e-10 67.8 66 50.0
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 5.6e-10 67.4 75 48.0
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 5.6e-10 67.4 64 51.6
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 5.6e-10 67.4 76 48.7
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 5.6e-10 67.4 66 50.0
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 5.6e-10 67.4 70 50.0
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 7.3e-10 67.0 69 49.3
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 7.3e-10 67.0 77 49.4
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 7.3e-10 67.0 73 46.6
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 9.5e-10 66.6 66 50.0
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 1.2e-09 66.2 76 46.1
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.6e-09 65.9 73 45.2
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 1.6e-09 65.9 67 47.8
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 2.1e-09 65.5 73 49.3
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 2.1e-09 65.5 71 47.9
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 2.1e-09 65.5 79 45.6
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 2.1e-09 65.5 73 45.2
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 2.1e-09 65.5 70 48.6
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 2.8e-09 65.1 69 49.3
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 3.6e-09 64.7 63 50.8
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 3.6e-09 64.7 67 53.7
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 4.7e-09 64.3 71 47.9
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 4.7e-09 64.3 64 48.4
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 4.7e-09 64.3 66 47.0
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 6.2e-09 63.9 66 48.5
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 6.2e-09 63.9 66 50.0
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 8.0e-09 63.5 71 46.5
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 1.4e-08 62.8 63 50.8
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 1.4e-08 62.8 63 49.2
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 1.4e-08 62.8 66 50.0
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 1.8e-08 62.4 63 49.2
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 1.8e-08 62.4 63 49.2
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 2.3e-08 62.0 70 45.7
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 2.3e-08 62.0 76 46.1
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 3.1e-08 61.6 73 45.2
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 3.1e-08 61.6 75 44.0
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 6.8e-08 60.5 63 47.6
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 6.8e-08 60.5 66 48.5
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 8.9e-08 60.1 64 45.3
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 8.9e-08 60.1 64 50.0
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 8.9e-08 60.1 73 43.8
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 2.0e-07 58.9 73 46.6
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 2.0e-07 58.9 63 47.6
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 2.0e-07 58.9 80 41.2
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 2.0e-07 58.9 69 43.5
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 3.4e-07 58.2 64 46.9
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 7.5e-07 57.0 67 46.3
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 7.5e-07 57.0 64 46.9
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 2.2e-06 55.5 66 42.4
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 2.2e-06 55.5 64 46.9
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 2.9e-06 55.1 77 42.9
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 2.9e-06 55.1 53 52.8


User provided reference genes

Program Settings