Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.2e-119 431.4 225 100.0
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.2e-105 386.7 225 92.4
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.8e-94 349.0 249 78.3
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.2e-78 297.0 247 72.9
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 7.3e-71 271.2 247 66.8
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 2.4e-66 256.1 273 60.4
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 2.5e-63 246.1 288 57.3
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 4.8e-62 241.9 245 61.6
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 8.4e-59 231.1 242 61.6
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.4e-58 228.4 226 62.8
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 2.7e-57 226.1 265 58.1
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 3.5e-57 225.7 246 59.8
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 9.6e-55 217.6 246 59.3
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 8.4e-51 204.5 227 57.7
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 5.5e-50 201.8 244 52.5
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 7.1e-50 201.4 160 71.2
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 4.6e-49 198.7 238 56.7
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 6.0e-49 198.4 250 51.6
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.3e-48 196.4 222 56.8
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 5.1e-48 195.3 243 52.3
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.5e-47 193.7 248 53.6
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 4.3e-47 192.2 257 53.7
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 5.6e-47 191.8 239 54.8
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 9.6e-47 191.0 245 53.9
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.6e-46 190.3 246 52.8
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 2.8e-46 189.5 246 51.2
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.4e-45 187.2 248 51.2
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 6.9e-45 184.9 235 54.9
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 6.9e-45 184.9 248 50.8
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.6e-44 183.0 244 52.5
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 2.6e-44 183.0 234 53.0
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 2.6e-44 183.0 249 50.6
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.4e-44 182.6 247 51.0
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 3.4e-44 182.6 205 58.0
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 4.5e-44 182.2 229 50.2
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 5.8e-44 181.8 250 51.2
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.3e-43 180.6 235 50.2
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.9e-43 179.5 247 50.2
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 2.9e-43 179.5 253 49.0
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.9e-43 178.7 235 53.2
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 8.4e-43 177.9 192 55.2
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 1.9e-42 176.8 238 51.7
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.9e-42 176.8 237 51.1
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 4.2e-42 175.6 241 49.0
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 5.5e-42 175.3 235 51.9
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 2.1e-41 173.3 272 47.1
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 2.7e-41 172.9 266 47.4
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 4.6e-41 172.2 240 50.4
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 4.6e-41 172.2 230 52.2
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 4.6e-41 172.2 206 56.8
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 7.9e-41 171.4 236 51.3
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 2.3e-40 169.9 239 51.9
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 2.3e-40 169.9 225 50.7
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 3.9e-40 169.1 248 51.2
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.1e-39 167.5 250 48.0
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 1.5e-39 167.2 243 50.2
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.9e-39 166.8 243 51.4
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 5.7e-39 165.2 247 47.4
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 7.4e-39 164.9 244 46.3
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 9.6e-39 164.5 192 56.2
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 3.7e-38 162.5 249 49.4
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 3.7e-38 162.5 237 47.7
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.8e-37 160.2 207 53.1
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 6.9e-37 158.3 253 48.6
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 2.0e-36 156.8 250 49.2
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 2.6e-36 156.4 244 44.7
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.6e-36 156.4 252 50.0
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 7.6e-36 154.8 250 50.4
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 5.0e-35 152.1 181 53.6
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 1.9e-34 150.2 180 52.8
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 9.3e-34 147.9 180 52.2
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 9.3e-34 147.9 180 52.2
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.2e-33 147.5 241 47.3
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 2.7e-33 146.4 204 50.0
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 3.5e-33 146.0 181 53.0
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 3.5e-33 146.0 181 53.0
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 4.6e-33 145.6 170 52.9
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 6.1e-33 145.2 179 50.8
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 7.9e-33 144.8 248 46.8
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 7.9e-33 144.8 187 49.7
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 1.0e-32 144.4 202 47.5
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.8e-32 143.7 248 47.2
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.8e-32 143.7 241 47.7
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.3e-32 143.3 246 43.5
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 3.0e-32 142.9 207 46.4
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 5.1e-32 142.1 229 45.9
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.1e-32 142.1 241 46.5
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.1e-32 142.1 241 46.5
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 8.7e-32 141.4 244 43.9
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 8.7e-32 141.4 254 46.9
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 8.7e-32 141.4 254 46.9
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 8.7e-32 141.4 244 43.4
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 8.7e-32 141.4 248 46.8
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.1e-31 141.0 245 42.4
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-31 140.6 237 46.4
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-31 140.6 237 46.4
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 1.9e-31 140.2 194 52.6
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 1.9e-31 140.2 242 48.3
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 2.5e-31 139.8 251 46.2
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 3.3e-31 139.4 241 46.1
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 3.3e-31 139.4 245 43.7
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 4.3e-31 139.0 250 46.4
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 9.7e-31 137.9 232 44.0
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 9.7e-31 137.9 227 44.1
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-30 137.5 241 44.8
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.8e-30 136.3 241 45.2
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 4.8e-30 135.6 183 51.9
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 4.8e-30 135.6 178 49.4
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 6.3e-30 135.2 113 63.7
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 6.3e-30 135.2 252 41.7
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 8.2e-30 134.8 242 43.8
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 8.2e-30 134.8 255 42.7
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-29 134.4 237 45.1
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.8e-29 133.7 241 44.8
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 2.4e-29 133.3 162 48.1
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 4.1e-29 132.5 241 44.8
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-29 132.5 241 44.8
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 4.1e-29 132.5 228 44.7
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 9.0e-29 131.3 178 48.3
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 9.0e-29 131.3 250 45.6
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.5e-28 130.6 244 43.0
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.5e-28 130.6 232 45.7
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 2.0e-28 130.2 246 43.5
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 2.0e-28 130.2 179 45.3
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.6e-28 129.8 250 45.2
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 3.4e-28 129.4 250 45.2
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 4.5e-28 129.0 233 44.6
CSS0008617 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.0e-27 127.9 70 95.7
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.3e-27 127.5 237 43.9
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.3e-27 127.5 218 44.0
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.7e-27 127.1 236 42.8
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 2.9e-27 126.3 235 45.1
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.0e-27 125.6 241 43.2
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 8.5e-27 124.8 229 45.9
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.5e-26 123.2 221 44.3
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 4.2e-26 122.5 178 49.4
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.6e-25 120.6 207 46.4
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.6e-25 120.6 177 49.2
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 1.0e-24 117.9 163 47.2
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 3.0e-24 116.3 163 46.6
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 5.1e-24 115.5 164 47.0
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 8.8e-24 114.8 237 43.9
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 5.7e-23 112.1 231 42.9
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 7.4e-23 111.7 165 48.5
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.7e-22 110.5 213 41.3
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 3.7e-22 109.4 136 49.3
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 8.2e-22 108.2 202 43.1
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.1e-21 107.8 234 41.5
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 1.8e-21 107.1 153 49.0
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.4e-21 106.7 166 44.6
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.1e-21 105.9 211 41.7
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 6.9e-21 105.1 182 46.7
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.2e-20 104.4 176 43.2
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.0e-20 103.6 215 40.5
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 2.2e-19 100.1 158 46.2
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.8e-19 99.4 151 44.4
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 3.8e-19 99.4 222 38.7
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 5.0e-19 99.0 169 43.2
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 4.2e-18 95.9 182 40.7
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 7.2e-18 95.1 204 39.2
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 9.4e-18 94.7 160 41.9
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 4.7e-17 92.4 171 34.5
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 7.9e-17 91.7 163 41.1
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 7.9e-17 91.7 200 38.5
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.4e-16 90.9 153 39.2
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.9e-16 89.4 163 40.5
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 3.3e-15 86.3 101 52.5
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 9.7e-15 84.7 286 30.4
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.2e-14 83.6 227 38.8
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 3.5e-12 76.3 171 33.9
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 5.0e-11 72.4 64 65.6
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.1e-10 71.2 113 38.9
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 1.9e-10 70.5 73 56.2
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.6e-09 67.4 177 34.5
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 2.1e-09 67.0 95 41.1
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 6.1e-09 65.5 213 32.9
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.2e-08 62.4 83 47.0
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.6e-07 60.1 84 45.2
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 7.5e-07 58.5 163 31.9
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 9.7e-07 58.2 183 31.7
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 1.3e-06 57.8 94 47.9
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 2.2e-06 57.0 157 31.2


User provided reference genes

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