Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 0.0e+00 1545.4 856 100.0
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 0.0e+00 1251.5 856 81.2
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 0.0e+00 1199.9 859 80.0
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 0.0e+00 1141.7 844 75.5
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 0.0e+00 1076.6 949 65.1
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 9.8e-310 1066.6 854 69.6
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 5.2e-303 1044.3 848 68.9
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 6.8e-303 1043.9 847 69.4
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 8.9e-303 1043.5 857 67.3
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 4.4e-302 1041.2 857 67.4
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 7.1e-300 1033.9 845 68.2
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 6.0e-299 1030.8 846 66.1
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.3e-298 1029.6 861 67.9
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.5e-297 1026.2 857 65.9
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 4.3e-297 1024.6 845 67.8
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.4e-295 1018.8 846 69.6
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 3.1e-295 1018.5 846 68.0
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 3.4e-294 1015.0 858 65.9
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 5.8e-294 1014.2 858 64.9
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 2.9e-293 1011.9 861 65.7
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 6.0e-291 1004.2 845 65.9
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.0e-290 1003.4 847 67.1
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.0e-290 1001.9 857 64.5
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 3.0e-290 1001.9 855 63.5
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 5.1e-290 1001.1 852 67.6
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 5.1e-290 1001.1 851 64.7
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 6.6e-290 1000.7 843 66.7
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 8.7e-290 1000.3 859 63.9
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 6.2e-288 994.2 844 66.1
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 3.1e-287 991.9 862 66.0
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 6.9e-287 990.7 854 67.6
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.5e-286 989.6 857 63.5
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.3e-285 986.5 857 63.4
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 3.2e-284 981.9 857 63.4
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 5.5e-284 981.1 847 63.4
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 9.3e-284 980.3 850 64.9
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 9.3e-284 980.3 846 63.8
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.2e-283 979.9 849 66.1
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 3.5e-283 978.4 845 62.6
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.0e-283 977.6 847 64.1
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.3e-282 975.7 848 62.7
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 3.9e-282 974.9 846 64.2
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 6.7e-282 974.2 857 63.5
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.1e-281 973.4 846 62.9
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 4.3e-281 971.5 848 62.3
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 4.3e-281 971.5 844 62.6
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 8.1e-280 967.2 861 63.1
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.1e-279 966.8 853 64.7
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.4e-279 966.5 857 63.2
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 3.1e-279 965.3 854 62.4
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 9.0e-279 963.8 846 62.3
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.2e-278 963.4 845 62.1
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.0e-278 962.6 850 61.9
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.7e-277 959.5 847 62.6
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.2e-277 959.1 862 65.5
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 3.2e-276 955.3 849 63.3
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 3.5e-275 951.8 850 61.2
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 7.9e-275 950.7 855 62.0
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.8e-274 949.5 862 65.1
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.8e-274 949.5 879 62.5
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.3e-274 949.1 848 64.6
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-273 946.8 857 61.3
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 5.7e-273 944.5 861 63.2
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.6e-272 943.0 843 62.4
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 3.7e-272 941.8 847 63.5
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 1.1e-271 940.3 861 61.3
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.2e-270 936.8 847 66.7
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 5.9e-270 934.5 863 64.3
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 3.3e-265 918.7 847 63.6
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 8.2e-264 914.1 857 61.6
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.0e-261 907.1 860 63.5
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 2.2e-261 906.0 844 62.0
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 4.1e-255 885.2 899 58.5
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 6.9e-255 884.4 848 61.4
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.6e-251 873.2 801 62.2
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.4e-250 870.2 870 57.4
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.9e-245 852.4 857 57.5
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.0e-245 851.7 870 56.1
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 8.2e-240 834.3 852 56.0
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.4e-239 833.6 848 55.0
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.3e-237 827.0 827 57.4
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.7e-237 826.6 830 58.7
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.7e-237 826.6 830 58.7
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 8.5e-237 824.3 830 58.7
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.5e-236 823.5 847 54.3
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 3.6e-235 818.9 851 55.3
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.3e-234 816.2 831 59.6
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.3e-234 816.2 831 59.6
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 4.8e-232 808.5 830 57.8
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 6.3e-232 808.1 858 54.9
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.4e-231 807.0 855 55.1
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 5.0e-229 798.5 860 56.9
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 8.0e-227 791.2 861 55.3
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.1e-220 770.8 620 72.4
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 4.0e-218 762.3 859 51.8
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.2e-211 740.7 849 51.8
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.2e-206 724.2 695 60.0
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.0e-205 719.5 821 50.4
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 7.3e-204 714.9 696 58.8
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 5.2e-202 708.8 855 48.9
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.5e-193 680.6 626 59.9
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.0e-185 653.7 558 62.2
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 4.9e-184 649.0 619 61.1
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-168 597.4 501 71.5
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.9e-159 567.4 450 67.1
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 3.7e-155 553.1 892 41.0
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 3.0e-141 506.9 857 42.5
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 6.7e-141 505.8 891 41.4
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.5e-140 504.6 796 44.2
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 3.1e-138 496.9 374 70.3
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.3e-136 491.5 461 66.2
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.5e-124 449.1 323 74.9
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.7e-123 448.0 400 63.0
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 5.7e-108 396.4 922 31.8
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 6.1e-102 376.3 330 65.5
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.4e-101 375.2 439 49.9
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.4e-101 375.2 293 68.9
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.4e-85 322.0 286 69.2
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 2.3e-85 321.2 234 73.5
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 8.9e-85 319.3 239 72.4
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 2.2e-83 314.7 458 43.4
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 8.6e-80 302.8 212 72.6
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.6e-76 289.7 347 47.8
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.9e-66 258.5 239 56.1
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 3.0e-64 251.1 214 59.3
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 4.8e-62 243.8 195 65.1
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 8.1e-62 243.0 270 57.0
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 9.9e-60 236.1 956 28.9
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.9e-58 231.9 181 84.5
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 4.2e-58 230.7 155 74.8
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.3e-54 219.2 205 62.0
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.9e-51 208.0 182 63.7
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.5e-44 185.7 155 63.9
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.6e-44 183.3 147 66.7
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 7.4e-39 166.8 170 55.9
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.6e-38 165.6 110 80.9
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.7e-30 139.0 173 47.4
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 6.3e-30 137.1 569 27.1
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 2.2e-27 128.6 279 38.4
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.2e-27 128.6 601 25.0
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 3.8e-27 127.9 104 61.5
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 8.5e-27 126.7 531 24.5
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.2e-26 124.8 77 80.5
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 2.7e-25 121.7 274 38.0
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 4.7e-25 120.9 96 67.7
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 3.0e-24 118.2 288 36.1
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 3.7e-22 111.3 85 61.2
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 4.8e-22 110.9 105 52.4
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.2e-18 98.2 122 54.1
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.2e-18 97.1 71 73.2
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.1e-13 83.2 178 42.1
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 4.1e-13 81.3 62 59.7
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.0e-12 79.0 53 67.9
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.3e-11 76.3 202 40.1
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 8.5e-11 73.6 65 58.5
Actinidia37122 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.2e-10 71.2 164 39.6
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 4.2e-10 71.2 205 39.0
Hma1.2p1_0468F.1_g158750 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.2e-08 64.3 88 71.6
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 6.7e-08 63.9 90 42.2
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 4.4e-07 61.2 55 52.7
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 7.5e-07 60.5 58 53.4
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 1.3e-06 59.7 60 53.3
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.3e-06 59.7 60 53.3
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.7e-06 59.3 148 27.7


User provided reference genes

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