Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013282 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 1.5e-40 169.1 85 100.0
CSS0006779 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 7.1e-19 97.1 80 66.2
Actinidia05806 Actinidia chinensis HOM05D007785 ORTHO05D008997 9.3e-19 96.7 81 64.2
Dinv43998 Davidia involucrata HOM05D007785 ORTHO05D008997 5.7e-16 87.4 64 73.4
Hma1.2p1_0601F.1_g187290 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 1.8e-14 82.4 80 60.0
Oeu021958.1 Olea europaea HOM05D007785 ORTHO05D008997 2.4e-14 82.0 80 58.8
MSTRG.17094 Avicennia marina HOM05D007785 ORTHO05D008997 5.3e-14 80.9 80 55.0
Rhsim01G0145700 Rhododendron simsii HOM05D007785 ORTHO05D008997 9.0e-14 80.1 84 61.9
Peaxi162Scf01144g00004 Petunia axillaris HOM05D007785 ORTHO05D008997 2.6e-13 78.6 81 53.1
Atru.chr5.15 Acer truncatum HOM05D007785 ORTHO05D008997 5.9e-13 77.4 80 53.8
Hma1.2p1_0021F.1_g014470 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 7.7e-13 77.0 77 55.8
Nitab4.5_0001476g0130 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.0e-12 76.6 81 53.1
Peaxi162Scf00901g00032 Petunia axillaris HOM05D007785 ORTHO05D008997 1.7e-12 75.9 80 52.5
vmacro21104 Vaccinium macrocarpon HOM05D008336 ORTHO05D008997 2.9e-12 75.1 102 51.0
Migut.B01462 Erythranthe guttata HOM05D007785 ORTHO05D008997 3.8e-12 74.7 81 51.9
Nn1g00585 Nelumbo nucifera HOM05D007785 ORTHO05D008997 3.8e-12 74.7 82 52.4
Solyc01g080890.2 Solanum lycopersicum HOM05D007785 ORTHO05D008997 1.9e-11 72.4 76 53.9
TAR374G0344 Trochodendron aralioides HOM05D007785 ORTHO05D008997 1.9e-11 72.4 82 53.7
Cc02_g26020 Coffea canephora HOM05D007785 ORTHO05D008997 3.2e-11 71.6 83 53.0
CiPaw.13G020000 Carya illinoinensis HOM05D007785 ORTHO05D008997 7.2e-11 70.5 81 50.6
TAR375G1071 Trochodendron aralioides HOM05D007785 ORTHO05D008997 7.2e-11 70.5 74 58.1
Sopen01g032480 Solanum pennellii HOM05D007785 ORTHO05D008997 9.4e-11 70.1 76 52.6
TAR636G3686 Trochodendron aralioides HOM05D007785 ORTHO05D008997 1.2e-10 69.7 78 52.6
MD07G1083000 Malus domestica HOM05D007785 ORTHO05D008997 1.6e-10 69.3 80 51.2
Nitab4.5_0003887g0040 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.6e-10 69.3 72 55.6
PGSC0003DMG400001700 Solanum tuberosum HOM05D007785 ORTHO05D008997 2.7e-10 68.6 76 53.9
Migut.N01702 Erythranthe guttata HOM05D007785 ORTHO05D008997 3.6e-10 68.2 78 52.6
Haze_02930 Corylus avellana HOM05D007785 ORTHO05D008997 6.1e-10 67.4 76 51.3
Oeu024374.1 Olea europaea HOM05D007785 ORTHO05D008997 1.4e-09 66.2 87 48.3
MD02G1229100 Malus domestica HOM05D007785 ORTHO05D008997 5.1e-09 64.3 80 47.5
Nn6g33639 Nelumbo nucifera HOM05D007785 ORTHO05D008997 5.1e-09 64.3 74 48.6
QL04p025073 Quercus lobata HOM05D007785 ORTHO05D008997 1.1e-08 63.2 78 44.9
Nitab4.5_0006705g0010 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.9e-08 62.4 73 53.4
FAN01G0084 Fragaria x ananassa HOM05D007785 ORTHO05D008997 2.5e-08 62.0 81 49.4
Nitab4.5_0000166g0090 Nicotiana tabacum HOM05D007785 ORTHO05D008997 3.3e-08 61.6 73 53.4
RcHm_v2.0_Chr1g0341401 Rosa chinensis HOM05D007785 ORTHO05D008997 3.3e-08 61.6 86 47.7
SalBow5G3019 Salvia bowleyana HOM05D007785 ORTHO05D008997 3.3e-08 61.6 80 47.5
FvH4_7g07910 Fragaria vesca HOM05D007785 ORTHO05D008997 4.3e-08 61.2 81 48.1
FAN06G1471 Fragaria x ananassa HOM05D007785 ORTHO05D008997 4.3e-08 61.2 81 48.1
FAN10G3075 Fragaria x ananassa HOM05D007785 ORTHO05D008997 4.3e-08 61.2 81 48.1
Potri.001G145066 Populus trichocarpa HOM05D007785 ORTHO05D008997 4.3e-08 61.2 78 47.4
Aqoxy3G02467 Aquilegia oxysepala HOM05D007785 ORTHO05D008997 1.7e-07 59.3 78 46.2
Sed0022240 Sechium edule HOM05D007785 ORTHO05D008997 1.7e-07 59.3 91 47.3
ECA234G3743 Erigeron canadensis HOM05D007785 ORTHO05D008997 2.2e-07 58.9 77 41.6
HanXRQChr16g0519261 Helianthus annuus HOM05D007785 ORTHO05D008997 2.2e-07 58.9 72 45.8
Sabra01G0113200 Salix brachista HOM05D007785 ORTHO05D008997 2.2e-07 58.9 76 46.1
Gohir.D13G012700 Gossypium hirsutum HOM05D007785 ORTHO05D008997 2.8e-07 58.5 78 47.4
Lalb_Chr05g0214041 Lupinus albus HOM05D007785 ORTHO05D008997 3.7e-07 58.2 73 52.1
Manes.15G169900 Manihot esculenta HOM05D007785 ORTHO05D008997 3.7e-07 58.2 76 47.4
Gohir.A13G011800 Gossypium hirsutum HOM05D007785 ORTHO05D008997 4.8e-07 57.8 78 47.4
Gorai.013G013800 Gossypium raimondii HOM05D007785 ORTHO05D008997 6.3e-07 57.4 78 47.4
ClCG05G002700 Citrullus lanatus HOM05D007785 ORTHO05D008997 1.4e-06 56.2 90 44.4
Ciclev10023085m.g Citrus clementina HOM05D007785 ORTHO05D008997 1.4e-06 56.2 75 49.3
CsaV3_3G010180 Cucumis sativus L. HOM05D007785 ORTHO05D008997 1.4e-06 56.2 91 44.0
Glyma.01G199900 Glycine max HOM05D007785 ORTHO05D008997 3.1e-06 55.1 72 44.4
SalBow4G1855 Salvia bowleyana HOM05D007785 ORTHO05D008997 3.1e-06 55.1 84 46.4
DCAR_025013 Daucus carota HOM05D007785 ORTHO05D008997 4.1e-06 54.7 77 41.6
FAN03G1138 Fragaria x ananassa HOM05D007785 ORTHO05D008997 4.1e-06 54.7 81 45.7
Lalb_Chr09g0329531 Lupinus albus HOM05D007785 ORTHO05D008997 4.1e-06 54.7 72 45.8
COL.COLO4_17092 Corchorus olitorius HOM05D012518 ORTHO05D008997 5.3e-06 54.3 83 37.3
MELO3C006238.2 Cucumis melo HOM05D007785 ORTHO05D008997 5.3e-06 54.3 89 43.8
HanXRQChr16g0520951 Helianthus annuus HOM05D007785 ORTHO05D008997 5.3e-06 54.3 75 42.7
unitig_5.g30995 Utricularia gibba HOM05D000121 ORTHO05D000102 6.9e-06 53.9 76 44.7
unitig_748.g7129 Utricularia gibba HOM05D000121 ORTHO05D000102 6.9e-06 53.9 76 44.7


User provided reference genes

Program Settings