Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 3.1e-66 255.0 129 100.0
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 3.7e-59 231.5 131 90.8
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 6.9e-58 227.3 129 89.1
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 9.1e-58 226.9 129 87.6
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 9.1e-58 226.9 128 89.1
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.5e-57 226.1 129 86.8
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 3.4e-57 224.9 129 87.6
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 5.0e-56 221.1 129 87.6
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 6.5e-56 220.7 129 86.8
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.1e-55 219.9 133 85.7
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 3.2e-55 218.4 128 85.9
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 4.2e-55 218.0 129 87.6
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 5.5e-55 217.6 132 87.1
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 7.2e-55 217.2 129 86.8
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 7.2e-55 217.2 129 86.8
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 7.2e-55 217.2 129 86.0
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 9.4e-55 216.9 129 86.0
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.2e-54 216.5 129 86.8
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.7e-54 215.3 131 86.3
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.2e-53 211.1 129 86.0
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 6.7e-53 210.7 124 86.3
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.5e-52 209.5 131 81.7
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 2.6e-52 208.8 129 80.6
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.6e-52 208.8 129 82.2
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 4.4e-52 208.0 131 81.7
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 5.7e-52 207.6 131 80.9
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 5.7e-52 207.6 129 85.3
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 5.7e-52 207.6 130 83.8
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 7.4e-52 207.2 131 80.9
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.7e-51 206.1 129 80.6
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.2e-51 205.7 129 81.4
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 2.2e-51 205.7 132 81.1
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 2.2e-51 205.7 129 83.7
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 2.2e-51 205.7 131 80.9
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 2.2e-51 205.7 132 81.1
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 4.8e-51 204.5 129 79.8
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 8.2e-51 203.8 129 83.7
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 8.2e-51 203.8 131 81.7
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 4.1e-50 201.4 129 82.2
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 5.3e-50 201.1 129 81.4
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.3e-50 201.1 129 81.4
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 7.0e-50 200.7 129 80.6
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.6e-49 199.5 130 82.3
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 2.0e-49 199.1 130 79.2
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.6e-49 198.7 134 79.9
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 2.6e-49 198.7 132 79.5
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 3.5e-49 198.4 129 79.1
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 4.5e-49 198.0 129 77.5
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 5.9e-49 197.6 129 78.3
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 5.9e-49 197.6 129 80.6
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 5.9e-49 197.6 127 78.0
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 5.9e-49 197.6 127 78.0
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 5.9e-49 197.6 129 79.1
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.3e-48 196.4 130 80.0
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.3e-48 196.4 129 78.3
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 2.2e-48 195.7 129 79.1
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 2.2e-48 195.7 129 79.1
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 2.2e-48 195.7 129 80.6
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 3.8e-48 194.9 131 77.1
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 6.5e-48 194.1 127 79.5
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.1e-47 193.4 132 77.3
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 1.9e-47 192.6 130 77.7
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.9e-47 192.6 130 81.5
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 3.2e-47 191.8 129 78.3
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.2e-47 191.8 129 78.3
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 9.4e-47 190.3 132 78.0
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 1.6e-46 189.5 115 83.5
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.6e-46 189.5 129 77.5
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.1e-46 189.1 131 76.3
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.7e-46 188.0 132 77.3
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 6.1e-46 187.6 129 76.0
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 8.0e-46 187.2 129 76.7
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 8.0e-46 187.2 130 79.2
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 1.4e-45 186.4 129 78.3
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.8e-45 186.0 127 76.4
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 2.3e-45 185.7 129 74.4
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.3e-45 185.7 126 79.4
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 3.0e-45 185.3 132 76.5
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 3.0e-45 185.3 132 76.5
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 5.2e-45 184.5 132 75.0
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.7e-45 184.1 129 74.4
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.7e-45 184.1 129 74.4
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.7e-45 184.1 129 74.4
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 8.8e-45 183.7 133 74.4
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 8.8e-45 183.7 133 74.4
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 8.8e-45 183.7 133 74.4
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 8.8e-45 183.7 133 74.4
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 8.8e-45 183.7 130 75.4
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 1.2e-44 183.3 121 81.0
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 1.5e-44 183.0 133 74.4
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.5e-44 183.0 121 80.2
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.6e-44 182.2 129 76.7
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.6e-44 182.2 127 74.8
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 4.4e-44 181.4 129 71.3
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 5.7e-44 181.0 127 74.8
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 5.7e-44 181.0 117 82.1
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.3e-43 179.9 118 78.0
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 2.2e-43 179.1 117 78.6
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 8.2e-43 177.2 121 76.0
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 8.2e-43 177.2 121 76.0
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 8.2e-43 177.2 121 76.0
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 8.2e-43 177.2 131 74.8
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.1e-42 176.8 103 87.4
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.1e-42 176.8 104 85.6
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 3.1e-42 175.3 130 71.5
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 7.0e-42 174.1 135 73.3
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 7.0e-42 174.1 132 72.7
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.2e-41 173.3 129 73.6
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.5e-41 171.8 129 72.9
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 7.7e-41 170.6 131 71.8
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.3e-40 169.9 131 71.0
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.7e-40 169.5 96 88.5
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.9e-40 168.7 131 71.8
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 2.9e-40 168.7 119 73.1
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.1e-39 166.8 129 71.3
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.1e-39 166.8 103 80.6
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.9e-39 166.0 96 84.4
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.9e-39 166.0 129 70.5
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.9e-39 166.0 128 68.8
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.9e-39 166.0 128 68.8
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.2e-38 163.3 110 76.4
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 2.1e-38 162.5 118 72.0
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.6e-38 161.8 117 71.8
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.0e-37 160.2 118 71.2
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 8.8e-37 157.1 131 67.2
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.2e-36 156.8 118 69.5
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 4.4e-36 154.8 128 67.2
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.7e-35 152.9 108 66.7
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.1e-34 148.3 94 78.7
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.6e-33 146.4 114 69.3
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 2.0e-33 146.0 116 62.1
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 2.0e-33 146.0 87 82.8
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.5e-33 144.8 95 80.0
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 7.7e-33 144.1 87 81.6
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 1.3e-32 143.3 115 65.2
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 4.7e-30 134.8 129 59.7
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 1.0e-29 133.7 125 62.4
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 4.0e-29 131.7 90 76.7
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 8.8e-29 130.6 76 82.9
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.5e-28 129.8 112 64.3
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 2.6e-28 129.0 114 64.9
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.9e-27 124.8 94 70.2
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.6e-25 119.8 123 59.3
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.7e-25 119.0 69 88.4
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 8.6e-24 114.0 129 56.6
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 7.3e-23 110.9 124 54.0
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 6.1e-22 107.8 71 74.6
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.2e-20 103.6 78 70.5
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 4.4e-20 101.7 81 66.7
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 4.1e-18 95.1 97 50.5
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.6e-17 91.7 46 100.0
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.9e-16 88.6 69 69.6
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 2.5e-15 85.9 106 45.3
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 2.1e-14 82.8 68 58.8
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.5e-07 60.1 74 50.0


User provided reference genes

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