Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013243 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 1.6e-135 486.1 246 100.0
CSS0037823 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 2.7e-103 379.0 238 84.5
CSS0002315 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 3.7e-100 368.6 233 84.5
CSS0006874 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 5.3e-91 338.2 225 80.4
Actinidia00502 Actinidia chinensis HOM05D000626 ORTHO05D003868 9.1e-75 284.3 189 75.7
TAR628G0085 Trochodendron aralioides HOM05D000626 ORTHO05D003868 2.5e-72 276.2 185 72.4
GSVIVG01031917001 Vitis vinifera HOM05D000626 ORTHO05D003868 2.5e-72 276.2 233 63.1
Dinv39947 Davidia involucrata HOM05D000626 ORTHO05D003868 3.2e-72 275.8 238 62.6
QL11p042537 Quercus lobata HOM05D000626 ORTHO05D003868 1.2e-71 273.9 238 62.6
CiPaw.05G061300 Carya illinoinensis HOM05D000626 ORTHO05D003868 1.6e-71 273.5 232 62.9
Hma1.2p1_0066F.1_g036710 Hydrangea macrophylla HOM05D000626 ORTHO05D003868 3.6e-71 272.3 192 69.8
Lj3g0026150 Lotus japonicus HOM05D000626 ORTHO05D003868 3.6e-71 272.3 238 61.3
Glyma.11G120300 Glycine max HOM05D000626 ORTHO05D003868 6.1e-71 271.6 238 60.9
Phvul.011G047300 Phaseolus vulgaris HOM05D000626 ORTHO05D003868 6.1e-71 271.6 238 61.8
Manes.13G136200 Manihot esculenta HOM05D000626 ORTHO05D003868 8.0e-71 271.2 238 60.1
Actinidia36541 Actinidia chinensis HOM05D000626 ORTHO05D003868 3.0e-70 269.2 225 63.1
MD10G1081300 Malus domestica HOM05D000626 ORTHO05D003868 4.0e-70 268.9 234 63.7
Glyma.12G045400 Glycine max HOM05D000626 ORTHO05D003868 6.8e-70 268.1 238 60.1
vmacro02136 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 6.8e-70 268.1 242 61.6
VMungo1127G0953 Vigna mungo HOM05D000626 ORTHO05D003868 6.8e-70 268.1 238 61.8
Cc07_g09070 Coffea canephora HOM05D000626 ORTHO05D003868 8.8e-70 267.7 235 59.6
Duzib132G0298 Durio zibethinus HOM05D000626 ORTHO05D003868 8.8e-70 267.7 239 61.5
Thecc.02G122300 Theobroma cacao HOM05D000626 ORTHO05D003868 8.8e-70 267.7 239 59.8
Psat7g141000 Pisum sativum HOM05D000626 ORTHO05D003868 1.2e-69 267.3 238 59.7
HanXRQChr15g0487501 Helianthus annuus HOM05D000626 ORTHO05D003868 2.0e-69 266.5 236 60.2
MD05G1070400 Malus domestica HOM05D000626 ORTHO05D003868 2.0e-69 266.5 234 61.5
Prupe.8G102600 Prunus persica HOM05D000626 ORTHO05D003868 2.0e-69 266.5 234 63.2
Peaxi162Scf00684g00567 Petunia axillaris HOM05D000626 ORTHO05D003868 2.6e-69 266.2 238 59.7
TPR.G28529 Trifolium pratense HOM05D000626 ORTHO05D003868 3.4e-69 265.8 238 59.7
GSVIVG01019024001 Vitis vinifera HOM05D000626 ORTHO05D003868 3.4e-69 265.8 232 61.2
Aqoxy5G01696 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 4.4e-69 265.4 231 60.2
Nitab4.5_0008989g0040 Nicotiana tabacum HOM05D000626 ORTHO05D003868 7.5e-69 264.6 233 60.1
Cc02_g17860 Coffea canephora HOM05D000626 ORTHO05D003868 9.8e-69 264.2 228 61.0
Gorai.013G052700 Gossypium raimondii HOM05D000626 ORTHO05D003868 9.8e-69 264.2 239 59.0
TAR376G0372 Trochodendron aralioides HOM05D000626 ORTHO05D003868 9.8e-69 264.2 232 60.8
Duzib052G0942 Durio zibethinus HOM05D000626 ORTHO05D003868 1.3e-68 263.8 239 59.4
TWI31G0747 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 1.7e-68 263.5 233 60.1
Medtr4g069240 Medicago truncatula HOM05D000626 ORTHO05D003868 2.8e-68 262.7 232 60.3
RcHm_v2.0_Chr6g0262991 Rosa chinensis HOM05D000626 ORTHO05D003868 2.8e-68 262.7 246 61.4
COL.COLO4_32455 Corchorus olitorius HOM05D000626 ORTHO05D003868 3.7e-68 262.3 239 59.0
Gohir.D13G047000 Gossypium hirsutum HOM05D000626 ORTHO05D003868 4.9e-68 261.9 239 58.2
Nn5g29507 Nelumbo nucifera HOM05D000626 ORTHO05D003868 4.9e-68 261.9 216 63.9
FvH4_2g08200 Fragaria vesca HOM05D000626 ORTHO05D003868 6.3e-68 261.5 239 59.8
Nitab4.5_0001794g0020 Nicotiana tabacum HOM05D000626 ORTHO05D003868 6.3e-68 261.5 233 59.7
Atru.chr3.513 Acer truncatum HOM05D000626 ORTHO05D003868 1.1e-67 260.8 232 58.2
Gohir.A13G048600 Gossypium hirsutum HOM05D000626 ORTHO05D003868 1.4e-67 260.4 226 60.6
SalBow6G3366 Salvia bowleyana HOM05D000626 ORTHO05D003868 1.4e-67 260.4 232 57.8
Gohir.D04G159100 Gossypium hirsutum HOM05D000626 ORTHO05D003868 1.8e-67 260.0 239 58.6
Gorai.012G146500 Gossypium raimondii HOM05D000626 ORTHO05D003868 1.8e-67 260.0 239 58.6
CAN.G322.113 Capsicum annuum HOM05D000626 ORTHO05D003868 3.1e-67 259.2 233 57.1
CDE01G0575 Ceratophyllum demersum HOM05D000626 ORTHO05D003868 3.1e-67 259.2 236 56.8
Cpa.g.sc158.17 Carica papaya HOM05D000626 ORTHO05D003868 4.1e-67 258.8 232 58.2
Manes.12G098300 Manihot esculenta HOM05D000626 ORTHO05D003868 4.1e-67 258.8 230 58.3
MELO3C021946.2 Cucumis melo HOM05D000626 ORTHO05D003868 5.4e-67 258.5 238 59.2
Cpa.g.sc62.112 Carica papaya HOM05D000626 ORTHO05D003868 7.0e-67 258.1 174 71.8
Gohir.A04G117400 Gossypium hirsutum HOM05D000626 ORTHO05D003868 7.0e-67 258.1 239 58.6
Oeu035116.1 Olea europaea HOM05D000626 ORTHO05D003868 7.0e-67 258.1 236 56.8
PSO675G2926 Papaver somniferum HOM05D000626 ORTHO05D003868 7.0e-67 258.1 216 61.6
Potri.005G127000 Populus trichocarpa HOM05D000626 ORTHO05D003868 7.0e-67 258.1 222 59.0
SGA_v2.0_scaffold58G20567 Striga asiatica HOM05D000626 ORTHO05D003868 7.0e-67 258.1 236 58.5
PSO541G5997 Papaver somniferum HOM05D000626 ORTHO05D003868 9.2e-67 257.7 216 61.6
CsaV3_2G014400 Cucumis sativus L. HOM05D000626 ORTHO05D003868 1.2e-66 257.3 238 58.8
Sed0005165 Sechium edule HOM05D000626 ORTHO05D003868 1.6e-66 256.9 233 58.8
HPP92_010187 Vanilla planifolia HOM05D000626 ORTHO05D003868 2.0e-66 256.5 219 59.8
Thecc.01G041600 Theobroma cacao HOM05D000626 ORTHO05D003868 2.7e-66 256.1 238 56.3
Ciclev10028484m.g Citrus clementina HOM05D000626 ORTHO05D003868 3.5e-66 255.8 234 58.5
ClCG09G017810 Citrullus lanatus HOM05D000626 ORTHO05D003868 7.7e-66 254.6 236 58.1
Eucgr.G01893 Eucalyptus grandis HOM05D000626 ORTHO05D003868 7.7e-66 254.6 231 59.7
ECA232G3839 Erigeron canadensis HOM05D000626 ORTHO05D003868 1.3e-65 253.8 232 59.1
Solyc01g109410.4 Solanum lycopersicum HOM05D000626 ORTHO05D003868 1.3e-65 253.8 224 58.9
unitig_37.g12815 Utricularia gibba HOM05D000626 ORTHO05D003868 1.3e-65 253.8 231 59.3
MSTRG.16792 Avicennia marina HOM05D000626 ORTHO05D003868 1.7e-65 253.4 222 59.9
Potri.007G031000 Populus trichocarpa HOM05D000626 ORTHO05D003868 1.7e-65 253.4 233 56.7
PGR042G1683 Punica granatum HOM05D000626 ORTHO05D003868 1.7e-65 253.4 238 58.0
SalBow5G3169 Salvia bowleyana HOM05D000626 ORTHO05D003868 2.3e-65 253.1 185 64.9
Sed0006655 Sechium edule HOM05D000626 ORTHO05D003868 2.3e-65 253.1 227 59.0
Lalb_Chr01g0002691 Lupinus albus HOM05D000626 ORTHO05D003868 2.9e-65 252.7 238 57.1
Sopen01g051600 Solanum pennellii HOM05D000626 ORTHO05D003868 2.9e-65 252.7 230 57.0
Oeu032561.1 Olea europaea HOM05D000626 ORTHO05D003868 3.8e-65 252.3 230 57.4
Migut.H00194 Erythranthe guttata HOM05D000626 ORTHO05D003868 5.0e-65 251.9 233 55.8
ATR0733G160 Amborella trichopoda HOM05D000626 ORTHO05D003868 6.6e-65 251.5 215 58.6
DCAR_017221 Daucus carota HOM05D000626 ORTHO05D003868 1.1e-64 250.8 238 57.1
Lj5C200G5 Lonicera japonica HOM05D000626 ORTHO05D003868 1.1e-64 250.8 231 58.4
MSTRG.23557 Avicennia marina HOM05D000626 ORTHO05D003868 3.3e-64 249.2 227 56.8
SGA_v2.0_scaffold33G13424 Striga asiatica HOM05D000626 ORTHO05D003868 4.3e-64 248.8 235 54.9
Duzib264G0072 Durio zibethinus HOM05D000626 ORTHO05D003868 7.3e-64 248.1 238 55.5
TWI53G0930 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 1.6e-63 246.9 233 57.1
Prupe.7G148700 Prunus persica HOM05D000626 ORTHO05D003868 2.1e-63 246.5 235 55.7
TWI09G1554 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 2.1e-63 246.5 233 55.4
Sabra07G0026800 Salix brachista HOM05D000626 ORTHO05D003868 2.8e-63 246.1 248 54.0
Atru.chr5.2949 Acer truncatum HOM05D000626 ORTHO05D003868 3.6e-63 245.7 230 57.0
Aqoxy6G01025 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 4.7e-63 245.4 236 58.9
Lalb_Chr03g0025801 Lupinus albus HOM05D000626 ORTHO05D003868 4.7e-63 245.4 233 55.4
THA.LOC104819216 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 4.7e-63 245.4 233 56.2
Lj4C195G12 Lonicera japonica HOM05D000626 ORTHO05D003868 6.1e-63 245.0 233 56.7
THA.LOC104826869 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 8.0e-63 244.6 232 56.0
CANSAT01G0918 Cannabis sativa HOM05D000626 ORTHO05D003868 1.0e-62 244.2 185 61.6
FAN20G2380 Fragaria x ananassa HOM05D000626 ORTHO05D003868 1.0e-62 244.2 239 57.3
SGA_v2.0_scaffold276G46656 Striga asiatica HOM05D000626 ORTHO05D003868 1.0e-62 244.2 238 54.6
Nitab4.5_0000336g0150 Nicotiana tabacum HOM05D000626 ORTHO05D003868 5.2e-62 241.9 170 70.0
arahy.Tifrunner.gnm1.ann1.GNS53T Arachis hypogaea HOM05D000626 ORTHO05D003868 6.8e-62 241.5 235 57.0
MD15G1269000 Malus domestica HOM05D000626 ORTHO05D003868 1.2e-61 240.7 235 54.5
Zm00001eb303200 Zea mays HOM05D000626 ORTHO05D003868 1.2e-61 240.7 235 54.0
arahy.Tifrunner.gnm1.ann1.NL7PFA Arachis hypogaea HOM05D000626 ORTHO05D003868 2.0e-61 240.0 235 56.6
Thhalv10004242m.g Eutrema salsugineum HOM05D000626 ORTHO05D003868 2.6e-61 239.6 238 53.4
Carub.0008s2782 Capsella rubella HOM05D000626 ORTHO05D003868 5.7e-61 238.4 232 53.9
AT5G66680 Arabidopsis thaliana HOM05D000626 ORTHO05D003868 1.3e-60 237.3 232 53.4
BcaB04g20111 Brassica carinata HOM05D000626 ORTHO05D003868 2.9e-60 236.1 238 52.9
CARHR281040 Cardamine hirsuta HOM05D000626 ORTHO05D003868 2.9e-60 236.1 238 52.9
Manes.15G148600 Manihot esculenta HOM05D000626 ORTHO05D003868 3.7e-60 235.7 191 61.8
FAN27G0454 Fragaria x ananassa HOM05D000626 ORTHO05D003868 4.9e-60 235.3 252 55.6
Lsat_1_v5_gn_4_144441 Lactuca sativa HOM05D000626 ORTHO05D003868 4.9e-60 235.3 189 63.0
AL8G44800 Arabidopsis lyrata HOM05D000626 ORTHO05D003868 6.4e-60 235.0 238 52.1
BcaB02g10001 Brassica carinata HOM05D000626 ORTHO05D003868 1.1e-59 234.2 238 52.1
BcaC06g34731 Brassica carinata HOM05D000626 ORTHO05D003868 1.4e-59 233.8 238 52.5
C07p25140 Brassica napus HOM05D000626 ORTHO05D003868 1.4e-59 233.8 238 52.5
BolC7t43044H Brassica oleracea HOM05D000626 ORTHO05D003868 1.4e-59 233.8 238 52.5
FAN15G2364 Fragaria x ananassa HOM05D000626 ORTHO05D003868 2.4e-59 233.0 252 54.0
Aa31LG1G15220 Aethionema arabicum HOM05D000626 ORTHO05D003868 5.4e-59 231.9 238 50.8
BraA07t29454Z Brassica rapa HOM05D000626 ORTHO05D003868 5.4e-59 231.9 238 52.1
BolC9t54060H Brassica oleracea HOM05D000626 ORTHO05D003868 1.6e-58 230.3 238 52.9
Sc18g0004660 Simmondsia chinensis HOM05D000626 ORTHO05D003868 2.7e-58 229.6 238 53.4
BcaC04g23148 Brassica carinata HOM05D000626 ORTHO05D003868 3.5e-58 229.2 238 52.5
Sp2g30020 Schrenkiella parvula HOM05D000626 ORTHO05D003868 3.5e-58 229.2 238 50.8
A09p09850 Brassica napus HOM05D000626 ORTHO05D003868 5.9e-58 228.4 238 52.5
BraA09t36632Z Brassica rapa HOM05D000626 ORTHO05D003868 5.9e-58 228.4 238 52.5
C09p11660 Brassica napus HOM05D000626 ORTHO05D003868 7.8e-58 228.0 238 52.1
Ca_20850_v3 Cicer arietinum L. HOM05D000626 ORTHO05D003868 1.3e-57 227.3 175 64.6
Haze_02415 Corylus avellana HOM05D000626 ORTHO05D003868 3.0e-57 226.1 241 53.9
EL10Ac6g14893 Beta vulgaris HOM05D000626 ORTHO05D003868 1.5e-56 223.8 221 52.9
Lj2C447T14 Lonicera japonica HOM05D000626 ORTHO05D003868 1.9e-56 223.4 233 54.9
Hund06221 Selenicereus undatus HOM05D000626 ORTHO05D003868 3.3e-56 222.6 235 51.9
COL.COLO4_22139 Corchorus olitorius HOM05D000626 ORTHO05D003868 7.3e-56 221.5 238 51.7
CSS0014885 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 9.5e-56 221.1 238 50.8
Dinv26800 Davidia involucrata HOM05D000626 ORTHO05D003868 9.5e-56 221.1 225 56.0
Hund14135 Selenicereus undatus HOM05D000626 ORTHO05D003868 9.5e-56 221.1 217 52.1
A07p17280 Brassica napus HOM05D000626 ORTHO05D003868 1.6e-55 220.3 238 50.8
FAN24G1839 Fragaria x ananassa HOM05D000626 ORTHO05D003868 1.6e-55 220.3 282 48.2
vmacro23069 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 8.0e-55 218.0 202 58.4
SEGI_04451 Sequoiadendron giganteum HOM05D000626 ORTHO05D003868 4.0e-54 215.7 174 59.2
AUR62003200 Chenopodium quinoa HOM05D000626 ORTHO05D003868 6.8e-54 214.9 234 48.7
AagrBONN_evm.TU.Sc2ySwM_117.2383 Anthoceros agrestis HOM05D000626 ORTHO05D003868 2.2e-52 209.9 192 54.7
AUR62008017 Chenopodium quinoa HOM05D000626 ORTHO05D003868 6.4e-52 208.4 239 47.3
Mapoly0103s0006 Marchantia polymorpha HOM05D000626 ORTHO05D003868 8.3e-52 208.0 208 52.4
Ah.01g019620 Amaranthus hybridus HOM05D000626 ORTHO05D003868 4.1e-51 205.7 191 55.5
Pp3c24_6930 Physcomitrium patens HOM05D000626 ORTHO05D003868 7.0e-51 204.9 191 53.9
Peaxi162Scf00016g00944 Petunia axillaris HOM05D000626 ORTHO05D003868 9.2e-51 204.5 233 51.5
AUR62011357 Chenopodium quinoa HOM05D000626 ORTHO05D003868 1.6e-50 203.8 223 50.7
EL10Ac9g21756 Beta vulgaris HOM05D000626 ORTHO05D003868 2.0e-50 203.4 233 48.5
SMO358G0537 Selaginella moellendorffii HOM05D000626 ORTHO05D003868 8.6e-49 198.0 220 45.0
CBR_g28880 Chara braunii HOM05D000626 ORTHO05D003868 2.6e-45 186.4 185 47.0
Duzib147G0490 Durio zibethinus HOM05D000626 ORTHO05D003868 4.3e-40 169.1 222 45.0
Ah.03g139660 Amaranthus hybridus HOM05D000626 ORTHO05D003868 9.2e-35 151.4 143 55.2
Nitab4.5_0000199g0010 Nicotiana tabacum HOM05D000626 ORTHO05D003868 2.7e-34 149.8 144 56.9
AUR62016705 Chenopodium quinoa HOM05D000626 ORTHO05D003868 9.6e-32 141.4 217 40.6
MD12G1035200 Malus domestica HOM05D000626 ORTHO05D003868 8.1e-31 138.3 114 58.8
Actinidia25417 Actinidia chinensis HOM05D000626 ORTHO05D003868 1.4e-30 137.5 159 49.7
Potri.004G157900 Populus trichocarpa HOM05D000626 ORTHO05D003868 2.2e-28 130.2 116 57.8
HanXRQChr03g0075101 Helianthus annuus HOM05D000626 ORTHO05D003868 3.5e-26 122.9 118 55.9
Cre14.g614100 Chlamydomonas reinhardtii HOM05D000626 ORTHO05D003868 3.3e-24 116.3 204 35.3
Duzib251G0751 Durio zibethinus HOM05D000626 ORTHO05D003868 4.3e-24 115.9 123 48.8
HanXRQChr06g0170541 Helianthus annuus HOM05D000626 ORTHO05D003868 7.3e-24 115.2 86 65.1
Zm00001eb095330 Zea mays HOM05D000626 ORTHO05D003868 1.6e-23 114.0 128 50.0
BcaB07g29659 Brassica carinata HOM05D000626 ORTHO05D003868 9.9e-21 104.8 182 39.6
HanXRQChr05g0134001 Helianthus annuus HOM05D000626 ORTHO05D003868 3.0e-17 93.2 62 71.0
SGA_v2.0_scaffold31G12912 Striga asiatica HOM05D000626 ORTHO05D003868 2.5e-16 90.1 87 54.0
HPP92_010240 Vanilla planifolia HOM05D000626 ORTHO05D003868 3.1e-14 83.2 59 67.8
QL11p042736 Quercus lobata HOM05D000626 ORTHO05D003868 1.5e-13 80.9 59 67.8
SGA_v2.0_scaffold146G36209 Striga asiatica HOM05D000626 ORTHO05D003868 9.9e-13 78.2 111 44.1
Cfa019187 Carpinus fangiana HOM05D003289 ORTHO05D034141 2.7e-10 70.1 48 68.8
Potri.009G112922 Populus trichocarpa HOM05D000626 ORTHO05D003868 4.6e-10 69.3 69 56.5
Potri.T125804 Populus trichocarpa HOM05D000626 ORTHO05D003868 4.6e-10 69.3 69 56.5
CSS0032254 Camellia sinensis var. sinensis HOM05D007402 ORTHO05D003673 1.0e-09 68.2 55 65.5
Cpa.g.sc43.144 Carica papaya HOM05D000626 ORTHO05D003868 1.8e-09 67.4 52 59.6


User provided reference genes

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