Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 7.3e-196 687.2 384 100.0
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 8.6e-189 663.7 385 94.8
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 1.1e-138 497.3 381 69.6
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 5.9e-137 491.5 385 69.4
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 9.7e-132 474.2 367 69.8
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 3.0e-125 452.6 386 64.5
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 1.1e-124 450.7 389 63.8
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 3.3e-124 449.1 379 65.4
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 1.7e-123 446.8 420 61.2
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 4.1e-122 442.2 370 64.3
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 7.0e-122 441.4 376 62.8
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 4.5e-121 438.7 380 63.7
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 1.0e-120 437.6 385 63.9
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 1.9e-119 433.3 399 61.2
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 2.5e-119 433.0 385 61.0
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 9.4e-119 431.0 386 60.4
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 6.1e-118 428.3 371 62.3
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 1.3e-115 420.6 387 61.0
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.8e-114 416.8 389 59.4
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 3.1e-114 416.0 418 57.9
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 4.1e-114 415.6 392 58.9
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 4.1e-114 415.6 389 58.6
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 5.9e-113 411.8 385 59.7
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 3.8e-112 409.1 378 60.8
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 3.2e-111 406.0 394 57.6
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 3.6e-110 402.5 384 59.1
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.3e-109 399.8 397 56.7
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 2.0e-108 396.7 384 57.0
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 3.4e-108 396.0 386 56.7
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 2.2e-107 393.3 364 59.6
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 4.9e-107 392.1 386 56.2
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 1.4e-106 390.6 375 58.1
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 1.8e-106 390.2 372 58.3
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 2.4e-106 389.8 369 59.1
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 3.1e-106 389.4 384 56.5
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 7.0e-106 388.3 374 56.1
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 2.7e-105 386.3 370 58.9
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 4.5e-105 385.6 385 56.1
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 3.8e-104 382.5 329 62.0
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 6.1e-102 375.2 387 56.6
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 6.8e-101 371.7 360 56.9
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 6.8e-101 371.7 368 55.4
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 2.6e-100 369.8 376 56.4
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 1.3e-99 367.5 359 64.9
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 5.4e-98 362.1 386 53.9
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 9.2e-98 361.3 326 58.0
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 1.3e-96 357.5 334 60.2
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 1.3e-96 357.5 481 47.2
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 3.9e-96 355.9 382 50.5
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 3.9e-96 355.9 382 50.5
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 3.9e-96 355.9 386 53.1
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 2.5e-95 353.2 315 60.0
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 2.5e-95 353.2 374 54.8
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 5.6e-95 352.1 372 56.7
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 1.2e-94 350.9 375 51.7
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 8.0e-94 348.2 413 48.7
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 6.8e-93 345.1 445 47.4
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 4.4e-92 342.4 356 55.1
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 4.4e-92 342.4 384 49.0
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 9.8e-92 341.3 395 50.4
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 3.7e-91 339.3 392 49.2
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 8.3e-91 338.2 380 50.3
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 1.4e-90 337.4 378 49.5
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 1.9e-90 337.0 372 51.9
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 2.4e-90 336.7 394 53.8
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 2.0e-89 333.6 394 50.5
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 1.0e-88 331.3 384 49.0
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 1.0e-88 331.3 371 49.3
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.0e-88 331.3 370 53.0
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 1.7e-88 330.5 323 56.3
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 4.3e-87 325.9 330 52.4
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 1.6e-86 323.9 349 53.6
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 3.6e-86 322.8 424 44.1
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 4.0e-85 319.3 390 51.5
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 4.0e-85 319.3 298 56.7
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 2.9e-83 313.2 406 45.1
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 6.4e-83 312.0 382 45.3
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 8.3e-83 311.6 324 53.1
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 8.3e-83 311.6 381 46.5
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 1.4e-82 310.8 299 57.9
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 2.1e-81 307.0 383 46.2
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 2.1e-81 307.0 394 45.2
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 3.3e-79 299.7 321 52.6
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 7.3e-79 298.5 325 49.2
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 8.9e-77 291.6 331 50.8
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 8.9e-77 291.6 331 50.8
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 3.4e-76 289.7 384 45.3
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 3.4e-76 289.7 446 40.8
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 2.5e-71 273.5 419 47.5
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 5.6e-71 272.3 331 47.4
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 5.4e-66 255.8 181 68.5
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 7.3e-63 245.4 304 48.0
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 3.4e-60 236.5 384 40.6
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 4.5e-60 236.1 173 68.2
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 6.4e-59 232.3 377 40.3
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 4.2e-58 229.6 164 68.3
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 3.6e-54 216.5 255 48.6
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 6.2e-54 215.7 148 72.3
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 1.2e-41 174.9 314 39.8
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 5.7e-39 166.0 169 54.4
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 1.1e-37 161.8 183 59.0
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 7.2e-34 149.1 121 63.6
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 5.9e-28 129.4 91 73.6
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 5.9e-28 129.4 91 73.6
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 8.5e-19 99.0 111 51.4
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 1.9e-18 97.8 162 41.4
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 5.2e-16 89.7 169 34.9
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 1.1e-15 88.6 166 36.7
Pp3c7_6690 Physcomitrium patens HOM05D007038 ORTHO05D008893 9.7e-15 85.5 296 25.3
Mapoly0056s0109 Marchantia polymorpha HOM05D007038 ORTHO05D008893 1.4e-08 65.1 213 24.9
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 3.3e-07 60.5 59 52.5
HPP92_020432 Vanilla planifolia HOM05D000367 ORTHO05D008893 4.4e-07 60.1 94 44.7


User provided reference genes

Program Settings