Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 6448.2 3248 100.0
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 4997.2 3282 78.4
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 4847.3 3379 75.3
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 4751.0 3276 76.3
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 4348.1 3280 70.2
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 4238.0 3288 68.4
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 4223.3 3296 68.2
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 4210.6 3295 67.7
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 4195.6 3285 68.2
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 4143.6 3288 66.7
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 4119.3 3293 66.7
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4074.2 3294 65.7
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 4070.0 3289 65.8
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4020.7 3287 65.4
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 4014.9 3297 65.1
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 4004.5 3342 64.2
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 4002.2 3287 65.3
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3991.8 3293 64.6
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3991.4 3287 64.9
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3981.8 3282 64.7
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3979.1 3285 64.3
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3978.7 3285 64.2
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3972.2 3302 64.4
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3958.7 3285 64.0
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3954.8 3285 64.0
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3942.1 3285 63.7
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3843.1 3324 62.5
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3821.6 3297 62.7
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3790.3 3280 63.0
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3758.4 3291 61.8
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3757.6 3291 61.4
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3746.8 3299 61.4
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3743.7 3302 61.1
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3743.0 3293 61.9
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3742.2 3290 61.2
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3736.0 3292 61.4
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3734.5 3301 61.3
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3733.3 3279 61.6
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3731.0 3266 62.0
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3707.1 3278 61.4
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3689.8 3284 60.9
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3675.2 3298 60.5
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3668.2 3312 60.1
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3647.8 3274 60.5
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3647.8 3287 60.4
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3639.7 3311 59.7
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3613.5 3291 59.1
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3612.4 3173 61.2
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3606.2 3295 59.3
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3596.2 3293 59.5
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3578.5 2910 65.2
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3563.5 3290 59.0
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3546.9 3290 58.4
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3539.6 3294 58.6
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3505.3 3282 59.2
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3478.0 3289 57.6
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3470.6 3277 57.7
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3461.8 3284 57.7
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3444.4 3284 57.1
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3432.9 3286 57.3
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3415.6 3284 56.4
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3406.3 3284 56.2
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3401.7 3290 56.5
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3400.1 3282 56.9
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3398.6 3281 56.5
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3372.0 3344 55.7
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3367.0 3292 56.6
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 3349.3 2708 65.8
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3336.2 3284 55.8
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3333.1 3308 55.9
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 3316.2 3133 58.6
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 3289.6 2448 70.1
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 3283.4 3052 58.7
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 3192.1 3023 58.8
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 3112.0 3289 54.2
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 3004.2 3169 54.0
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2934.1 2034 75.9
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2701.4 3310 48.0
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2539.6 2458 56.3
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2525.4 1604 82.0
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2368.2 2568 52.9
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2314.7 1692 70.8
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 2297.3 1446 83.3
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 2291.9 1747 70.8
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2215.7 2002 59.6
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2199.5 3530 40.5
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2168.7 2455 50.5
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2163.7 1511 74.6
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2117.4 1472 74.7
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2110.1 2485 49.3
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 2060.4 2828 44.1
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1973.0 3354 38.6
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1946.4 3512 37.3
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1843.6 3525 36.4
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1615.1 1005 82.8
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1610.5 1751 51.6
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1508.4 2206 42.2
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1457.2 1252 60.7
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1361.3 1546 48.8
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1351.7 983 72.1
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1271.1 1010 66.3
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1265.0 1555 48.4
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1249.2 1503 48.6
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1211.4 842 73.2
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1157.5 826 72.2
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1096.6 1132 57.2
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1095.9 975 61.2
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 1.4e-308 1064.7 1323 46.9
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 3.0e-306 1057.0 1512 42.2
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.4e-303 1047.3 852 63.6
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 1.0e-298 1031.9 3354 27.4
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.1e-279 967.2 892 58.7
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 5.3e-279 966.5 750 66.4
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 4.4e-241 840.5 827 56.6
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 8.0e-211 740.0 823 49.7
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 1.6e-206 725.7 410 90.2
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 5.0e-205 720.7 441 82.5
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 6.2e-195 687.2 830 47.1
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.5e-193 682.6 887 45.0
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 3.4e-177 628.2 813 45.9
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 2.8e-163 582.0 838 40.9
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 2.8e-163 582.0 958 39.2
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 5.3e-146 524.6 609 48.1
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 2.5e-140 505.8 454 60.6
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 9.1e-138 497.3 410 63.7
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 7.4e-132 477.6 327 73.1
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 8.2e-131 474.2 539 52.3
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 7.4e-124 451.1 270 82.6
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.7e-123 449.9 250 88.8
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 5.9e-121 441.4 417 57.1
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 1.0e-117 430.6 672 40.2
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 2.6e-116 426.0 577 46.8
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-110 407.1 924 32.9
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 2.4e-106 392.9 302 66.9
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 2.6e-100 372.9 347 59.9
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 1.2e-97 364.0 845 32.1
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 3.5e-97 362.5 217 85.7
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 6.1e-94 351.7 355 54.6
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 2.3e-93 349.7 816 32.2
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 4.4e-92 345.5 246 69.9
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 2.2e-91 343.2 451 45.2
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 2.2e-91 343.2 244 68.0
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.2e-91 343.2 307 60.9
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.3e-79 302.8 960 28.4
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 8.3e-75 288.1 320 49.7
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 4.1e-74 285.8 301 54.2
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.6e-65 257.3 711 30.5
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 4.3e-63 249.2 155 79.4
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 2.4e-61 243.4 379 38.8
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.5e-49 203.0 717 27.6
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 2.3e-48 200.3 195 54.4
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 2.3e-48 200.3 380 35.5
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 2.5e-34 153.7 118 66.9
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 7.9e-33 148.7 82 87.8
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 2.8e-30 140.2 163 49.7
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 2.2e-27 130.6 112 63.4
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 2.1e-25 124.0 86 72.1
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 1.0e-24 121.7 99 66.7
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.1e-23 118.2 92 69.6
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 2.2e-22 114.0 70 82.9
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 4.8e-22 112.8 93 66.7
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 8.2e-22 112.1 109 55.0
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.6e-20 107.1 111 51.4
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 6.7e-16 92.4 65 69.2
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.8e-14 87.0 149 36.9
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 7.0e-13 82.4 58 74.1
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 4.5e-12 79.7 72 52.8
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 4.5e-12 79.7 93 46.2
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 1.7e-11 77.8 58 65.5
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 2.5e-10 73.9 97 46.4
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 1.2e-09 71.6 77 54.5
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 1.6e-09 71.2 45 75.6


User provided reference genes

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