Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.6e-49 199.1 103 100.0
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 3.2e-45 184.9 103 91.3
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 5.4e-45 184.1 103 89.3
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 2.0e-44 182.2 102 90.2
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 6.0e-44 180.6 103 90.3
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 1.7e-43 179.1 100 90.0
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 2.3e-43 178.7 103 91.3
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 3.0e-43 178.3 103 87.4
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 3.9e-43 177.9 101 88.1
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 5.0e-43 177.6 102 88.2
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 5.0e-43 177.6 103 86.4
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 1.1e-42 176.4 103 87.4
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 1.9e-42 175.6 102 86.3
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 2.5e-42 175.3 103 87.4
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 3.3e-42 174.9 103 85.4
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 5.6e-42 174.1 102 85.3
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 5.6e-42 174.1 103 85.4
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 5.6e-42 174.1 103 87.4
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 7.3e-42 173.7 102 83.3
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 9.5e-42 173.3 103 85.4
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 1.2e-41 172.9 103 84.5
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 1.6e-41 172.6 103 84.5
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 1.6e-41 172.6 103 86.4
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 1.6e-41 172.6 102 82.4
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 1.6e-41 172.6 101 84.2
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 2.1e-41 172.2 103 81.6
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 2.1e-41 172.2 103 84.5
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 2.8e-41 171.8 99 85.9
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 2.8e-41 171.8 103 84.5
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 2.8e-41 171.8 103 83.5
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 4.7e-41 171.0 103 84.5
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 6.2e-41 170.6 97 87.6
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 6.2e-41 170.6 103 82.5
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 6.2e-41 170.6 103 82.5
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 8.0e-41 170.2 102 81.4
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.1e-40 169.9 103 82.5
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.1e-40 169.9 103 82.5
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 1.1e-40 169.9 103 84.5
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 1.8e-40 169.1 103 83.5
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.8e-40 169.1 103 81.6
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 2.3e-40 168.7 103 80.6
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 3.1e-40 168.3 103 82.5
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 3.1e-40 168.3 103 81.6
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 3.1e-40 168.3 102 82.4
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 4.0e-40 167.9 103 79.6
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 5.2e-40 167.5 103 80.6
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 5.2e-40 167.5 103 80.6
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 8.9e-40 166.8 103 80.6
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 8.9e-40 166.8 100 85.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 8.9e-40 166.8 100 85.0
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 8.9e-40 166.8 102 80.4
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 8.9e-40 166.8 100 84.0
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 1.2e-39 166.4 103 80.6
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 2.6e-39 165.2 102 80.4
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 2.6e-39 165.2 103 80.6
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 2.6e-39 165.2 102 81.4
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 2.6e-39 165.2 99 83.8
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 2.6e-39 165.2 103 80.6
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 2.6e-39 165.2 103 78.6
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 3.4e-39 164.9 103 79.6
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 3.4e-39 164.9 100 80.0
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 4.4e-39 164.5 103 79.6
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 5.8e-39 164.1 103 78.6
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 9.8e-39 163.3 103 79.6
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 9.8e-39 163.3 98 83.7
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 9.8e-39 163.3 98 83.7
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 1.7e-38 162.5 103 78.6
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 1.7e-38 162.5 103 78.6
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 2.2e-38 162.2 100 83.0
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 2.2e-38 162.2 102 78.4
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 2.2e-38 162.2 99 82.8
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 3.7e-38 161.4 103 78.6
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 3.7e-38 161.4 103 78.6
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 3.7e-38 161.4 99 80.8
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 4.9e-38 161.0 102 79.4
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 4.9e-38 161.0 94 85.1
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 6.4e-38 160.6 103 78.6
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 8.3e-38 160.2 103 77.7
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 1.4e-37 159.5 102 78.4
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 1.4e-37 159.5 103 76.7
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 1.4e-37 159.5 103 76.7
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 1.4e-37 159.5 103 76.7
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 1.4e-37 159.5 100 79.0
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 1.9e-37 159.1 102 76.5
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.9e-37 159.1 102 76.5
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 1.9e-37 159.1 98 82.7
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 3.2e-37 158.3 100 78.0
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 3.2e-37 158.3 94 84.0
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 4.1e-37 157.9 103 76.7
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 5.4e-37 157.5 103 76.7
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 5.4e-37 157.5 97 77.3
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 7.0e-37 157.1 99 79.8
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 1.2e-36 156.4 101 76.2
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 77.7
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 1.6e-36 156.0 103 75.7
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 1.6e-36 156.0 103 75.7
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 1.6e-36 156.0 103 76.7
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 2.1e-36 155.6 95 78.9
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 2.1e-36 155.6 100 80.0
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 2.7e-36 155.2 99 79.8
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.5e-36 154.8 101 77.2
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 4.6e-36 154.5 103 76.7
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 4.6e-36 154.5 99 78.8
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 6.0e-36 154.1 96 79.2
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 6.0e-36 154.1 102 73.5
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 76.7
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 6.0e-36 154.1 101 79.2
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 6.0e-36 154.1 101 75.2
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 7.8e-36 153.7 99 76.8
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 7.8e-36 153.7 101 75.2
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 1.0e-35 153.3 101 76.2
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.0e-35 153.3 101 76.2
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.0e-35 153.3 101 76.2
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 1.7e-35 152.5 101 78.2
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 1.7e-35 152.5 103 73.8
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 1.7e-35 152.5 103 75.7
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 3.0e-35 151.8 101 78.2
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 1.1e-34 149.8 103 73.8
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 1.5e-34 149.4 101 72.3
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 2.5e-34 148.7 101 76.2
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 2.5e-34 148.7 101 76.2
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 3.3e-34 148.3 100 72.0
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.4e-31 137.9 105 72.4
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 7.5e-31 137.1 104 73.1
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 3.7e-30 134.8 74 85.1
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 6.0e-28 127.5 77 75.3
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 6.2e-25 117.5 156 44.9
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 8.9e-24 113.6 69 78.3
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 2.0e-23 112.5 69 76.8
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 4.4e-23 111.3 73 72.6
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 9.9e-23 110.2 70 75.7
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 6.4e-22 107.5 73 69.9
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 8.4e-22 107.1 73 68.5
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.1e-21 106.7 85 64.7
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 3.2e-21 105.1 69 68.1
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 3.5e-20 101.7 103 58.3
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 3.5e-20 101.7 89 59.6
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 4.6e-20 101.3 88 59.1
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 6.6e-19 97.4 62 75.8
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 7.3e-18 94.0 83 54.2
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.5e-15 86.3 98 55.1
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 4.9e-14 81.3 83 50.6
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 3.2e-13 78.6 54 70.4
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 4.2e-13 78.2 61 60.7
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 3.9e-11 71.6 75 53.3
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 1.3e-09 66.6 85 49.4
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.5e-07 59.7 101 36.6


User provided reference genes

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