Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013187 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 3.1e-47 191.4 96 100.0
CSS0010599 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 1.6e-46 189.1 96 99.0
Actinidia24082 Actinidia chinensis HOM05D007887 ORTHO05D009725 1.1e-26 123.2 99 65.7
Prupe.6G095800 Prunus persica HOM05D007887 ORTHO05D009725 2.9e-24 115.2 100 65.0
CiPaw.13G108000 Carya illinoinensis HOM05D007887 ORTHO05D009725 4.1e-23 111.3 100 64.0
Hma1.2p1_0071F.1_g038090 Hydrangea macrophylla HOM05D007887 ORTHO05D009725 1.6e-22 109.4 87 65.5
Manes.04G024800 Manihot esculenta HOM05D007887 ORTHO05D009725 2.7e-22 108.6 99 63.6
MD11G1131400 Malus domestica HOM05D007887 ORTHO05D009725 2.3e-21 105.5 101 62.4
MD03G1112500 Malus domestica HOM05D007887 ORTHO05D009725 3.0e-21 105.1 100 61.0
GSVIVG01025148001 Vitis vinifera HOM05D007887 ORTHO05D009725 3.0e-21 105.1 99 60.6
RcHm_v2.0_Chr5g0060411 Rosa chinensis HOM05D007887 ORTHO05D009725 5.1e-21 104.4 101 62.4
Thecc.09G259300 Theobroma cacao HOM05D007887 ORTHO05D009725 8.6e-21 103.6 99 58.6
FAN16G3357 Fragaria x ananassa HOM05D007887 ORTHO05D009725 1.1e-20 103.2 102 59.8
FvH4_3g33040 Fragaria vesca HOM05D007887 ORTHO05D009725 1.9e-20 102.4 102 60.8
FAN25G1511 Fragaria x ananassa HOM05D007887 ORTHO05D009725 1.9e-20 102.4 102 60.8
Haze_23901 Corylus avellana HOM05D007887 ORTHO05D009725 4.3e-20 101.3 100 61.0
TAR633G0435 Trochodendron aralioides HOM05D007887 ORTHO05D009725 5.6e-20 100.9 78 66.7
FAN11G2401 Fragaria x ananassa HOM05D007887 ORTHO05D009725 1.2e-19 99.8 102 59.8
Manes.11G141900 Manihot esculenta HOM05D007887 ORTHO05D009725 2.1e-19 99.0 99 59.6
Aqoxy1G00528 Aquilegia oxysepala HOM05D007887 ORTHO05D009725 5.2e-18 94.4 98 56.1
Cfa011356 Carpinus fangiana HOM05D007887 ORTHO05D009725 6.8e-18 94.0 102 58.8
Glyma.11G153796 Glycine max HOM05D007887 ORTHO05D009725 1.9e-15 85.9 104 56.7
Medtr4g060620 Medicago truncatula HOM05D007887 ORTHO05D009725 4.1e-15 84.7 100 51.0
Lalb_Chr19g0137421 Lupinus albus HOM05D007887 ORTHO05D009725 9.2e-15 83.6 100 53.0
TPR.G36408 Trifolium pratense HOM05D007887 ORTHO05D009725 1.6e-14 82.8 100 51.0
Glyma.12G071500 Glycine max HOM05D007887 ORTHO05D009725 2.1e-14 82.4 97 51.5
Lalb_Chr03g0027141 Lupinus albus HOM05D007887 ORTHO05D009725 2.7e-14 82.0 100 51.0
CANSAT54G2812 Cannabis sativa HOM05D007887 ORTHO05D009725 1.7e-13 79.3 97 50.5
PGSC0003DMG400008069 Solanum tuberosum HOM05D023935 ORTHO05D009725 3.0e-13 78.6 95 54.7
PGR119G2346 Punica granatum HOM05D007887 ORTHO05D009725 3.9e-13 78.2 90 54.4
Prupe.6G096000 Prunus persica HOM05D007887 ORTHO05D009725 5.1e-13 77.8 78 53.8
Sopen11g027840 Solanum pennellii HOM05D023935 ORTHO05D009725 5.1e-13 77.8 95 52.6
C03p12840 Brassica napus HOM05D007887 ORTHO05D009725 1.9e-12 75.9 94 47.9
Psat7g222640 Pisum sativum HOM05D007887 ORTHO05D009725 1.9e-12 75.9 104 49.0
BraA03t10429Z Brassica rapa HOM05D007887 ORTHO05D009725 2.5e-12 75.5 92 48.9
BraA02t05730Z Brassica rapa HOM05D007887 ORTHO05D009725 3.3e-12 75.1 100 48.0
arahy.Tifrunner.gnm1.ann1.5EA918 Arachis hypogaea HOM05D007887 ORTHO05D009725 4.3e-12 74.7 73 60.3
BcaC03g13976 Brassica carinata HOM05D007887 ORTHO05D009725 4.3e-12 74.7 100 48.0
BolC3t13748H Brassica oleracea HOM05D007887 ORTHO05D009725 5.6e-12 74.3 94 46.8
Cc01_g11470 Coffea canephora HOM05D007887 ORTHO05D009725 5.6e-12 74.3 116 46.6
C02p11720 Brassica napus HOM05D007887 ORTHO05D009725 7.3e-12 73.9 100 48.0
BolC2t07269H Brassica oleracea HOM05D007887 ORTHO05D009725 7.3e-12 73.9 100 48.0
arahy.Tifrunner.gnm1.ann1.ZKT7Q5 Arachis hypogaea HOM05D007887 ORTHO05D009725 9.6e-12 73.6 73 60.3
BcaB05g22638 Brassica carinata HOM05D007887 ORTHO05D009725 1.2e-11 73.2 101 49.5
BraA02t05732Z Brassica rapa HOM05D007887 ORTHO05D009725 1.6e-11 72.8 102 48.0
TPR.G11627 Trifolium pratense HOM05D007887 ORTHO05D009725 1.6e-11 72.8 110 47.3
arahy.Tifrunner.gnm1.ann1.VU6S4B Arachis hypogaea HOM05D007887 ORTHO05D009725 3.6e-11 71.6 73 60.3
A03p11140 Brassica napus HOM05D007887 ORTHO05D009725 3.6e-11 71.6 96 47.9
Solyc11g069115.1 Solanum lycopersicum HOM05D023935 ORTHO05D009725 4.7e-11 71.2 95 50.5
BcaC04g19700 Brassica carinata HOM05D007887 ORTHO05D009725 6.2e-11 70.9 100 50.0
C09p53030 Brassica napus HOM05D007887 ORTHO05D009725 6.2e-11 70.9 100 50.0
BolC9t58177H Brassica oleracea HOM05D007887 ORTHO05D009725 6.2e-11 70.9 100 49.0
Lj3g0000190 Lotus japonicus HOM05D007887 ORTHO05D009725 8.1e-11 70.5 105 46.7
Solyc11g069110.2 Solanum lycopersicum HOM05D023935 ORTHO05D009725 8.1e-11 70.5 95 50.5
BcaB08g36339 Brassica carinata HOM05D007887 ORTHO05D009725 1.1e-10 70.1 99 48.5
A10p17620 Brassica napus HOM05D007887 ORTHO05D009725 2.4e-10 68.9 99 48.5
BraA10t43842Z Brassica rapa HOM05D007887 ORTHO05D009725 2.4e-10 68.9 99 48.5
arahy.Tifrunner.gnm1.ann1.QG78WL Arachis hypogaea HOM05D007887 ORTHO05D009725 3.1e-10 68.6 73 57.5
Lj3g0011826 Lotus japonicus HOM05D007887 ORTHO05D009725 4.0e-10 68.2 103 48.5
Aa31LG1G12450 Aethionema arabicum HOM05D007887 ORTHO05D009725 5.2e-10 67.8 95 47.4
Eucgr.J00947 Eucalyptus grandis HOM05D007887 ORTHO05D009725 8.9e-10 67.0 104 45.2
Ca_01431_v3 Cicer arietinum L. HOM05D007887 ORTHO05D009725 1.5e-09 66.2 99 45.5
COL.COLO4_05193 Corchorus olitorius HOM05D007887 ORTHO05D009725 1.5e-09 66.2 72 59.7
Thhalv10015113m.g Eutrema salsugineum HOM05D007887 ORTHO05D009725 1.5e-09 66.2 97 46.4
Rhsim13G0092900 Rhododendron simsii HOM05D007887 ORTHO05D009725 2.0e-09 65.9 79 54.4
Sp6g21990 Schrenkiella parvula HOM05D007887 ORTHO05D009725 2.0e-09 65.9 100 48.0
CARHR274070 Cardamine hirsuta HOM05D007887 ORTHO05D009725 7.6e-09 63.9 94 45.7
Glyma.13G328200 Glycine max HOM05D007887 ORTHO05D009725 7.6e-09 63.9 96 43.8
vmacro03176 Vaccinium macrocarpon HOM05D007402 ORTHO05D009725 7.6e-09 63.9 96 52.1
Gohir.A13G220700 Gossypium hirsutum HOM05D037992 ORTHO05D009725 1.3e-08 63.2 100 44.0
PSO339G0915 Papaver somniferum HOM05D007887 ORTHO05D009725 1.3e-08 63.2 102 40.2
Peaxi162Scf00351g00317 Petunia axillaris HOM05D023935 ORTHO05D009725 1.3e-08 63.2 95 45.3
HanXRQChr13g0404441 Helianthus annuus HOM05D007887 ORTHO05D009725 2.9e-08 62.0 110 42.7
BcaB01g04657 Brassica carinata HOM05D007887 ORTHO05D009725 3.8e-08 61.6 97 46.4
Ciclev10029602m.g Citrus clementina HOM05D007887 ORTHO05D009725 3.8e-08 61.6 43 74.4
Phvul.011G072900 Phaseolus vulgaris HOM05D007887 ORTHO05D009725 3.8e-08 61.6 100 42.0
AT5G60400 Arabidopsis thaliana HOM05D007887 ORTHO05D009725 1.1e-07 60.1 94 45.7
DCAR_017079 Daucus carota HOM05D007887 ORTHO05D009725 1.9e-07 59.3 54 59.3
CDE09G0302 Ceratophyllum demersum HOM05D041108 ORTHO05D009725 2.4e-07 58.9 82 43.9
AL8G37010 Arabidopsis lyrata HOM05D007887 ORTHO05D009725 7.1e-07 57.4 97 44.3
arahy.Tifrunner.gnm1.ann1.N776CK Arachis hypogaea HOM05D007887 ORTHO05D009725 1.2e-06 56.6 72 54.2
ClCG02G021000 Citrullus lanatus HOM05D031230 ORTHO05D028893 2.1e-06 55.8 94 46.8
THA.LOC104799488 Tarenaya hassleriana HOM05D007887 ORTHO05D009725 2.7e-06 55.5 105 44.8


User provided reference genes

Program Settings