Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 2.2e-103 379.0 201 100.0
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 2.1e-85 319.3 187 94.7
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 9.7e-75 283.9 205 70.7
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.6e-69 266.5 214 66.8
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 2.9e-63 245.7 165 69.7
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 8.6e-63 244.2 173 69.4
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 2.5e-62 242.7 172 66.9
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 7.2e-62 241.1 203 60.1
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 3.6e-61 238.8 171 67.8
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 5.7e-59 231.5 205 60.0
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.4e-57 226.9 173 65.9
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 2.4e-57 226.1 174 65.5
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 5.4e-57 224.9 178 63.5
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 7.0e-57 224.6 204 56.4
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 9.2e-57 224.2 175 64.6
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 5.9e-56 221.5 164 68.9
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 7.8e-56 221.1 207 55.6
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 2.3e-55 219.5 173 59.0
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.3e-55 219.5 173 60.7
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.3e-55 219.5 225 54.2
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 3.8e-55 218.8 173 59.0
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 1.9e-54 216.5 213 53.5
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.9e-54 216.5 179 60.3
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.6e-53 213.4 177 58.2
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 2.1e-53 213.0 175 62.9
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 2.8e-53 212.6 174 61.5
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 6.1e-53 211.5 174 61.5
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 1.0e-52 210.7 174 62.6
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 1.4e-52 210.3 173 59.5
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 1.8e-52 209.9 179 59.2
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 1.8e-52 209.9 188 56.9
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 2.3e-52 209.5 198 55.1
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 6.8e-52 208.0 185 57.3
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 6.8e-52 208.0 175 60.0
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 8.9e-52 207.6 176 58.5
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 1.2e-51 207.2 164 62.2
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 4.4e-51 205.3 173 59.5
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 4.4e-51 205.3 177 62.7
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 4.4e-51 205.3 184 60.3
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 4.4e-51 205.3 199 53.8
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 5.8e-51 204.9 175 58.3
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.3e-50 203.8 197 57.4
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 1.3e-50 203.8 177 59.9
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 1.7e-50 203.4 208 55.8
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.7e-50 202.2 174 59.2
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 3.7e-50 202.2 174 59.2
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 8.3e-50 201.1 174 59.2
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.1e-49 200.7 206 52.4
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 2.4e-49 199.5 181 53.0
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 2.4e-49 199.5 203 53.7
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 2.0e-48 196.4 175 57.1
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.0e-48 196.4 175 58.9
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 2.7e-48 196.1 138 68.1
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 3.5e-48 195.7 174 53.4
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 4.6e-48 195.3 181 56.9
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 4.6e-48 195.3 177 54.2
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 6.0e-48 194.9 175 57.7
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 7.8e-48 194.5 176 55.1
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.0e-47 194.1 184 58.2
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.3e-47 193.7 176 57.4
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.7e-47 193.4 170 56.5
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 5.0e-47 191.8 177 54.8
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 5.0e-47 191.8 203 51.2
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 3.3e-46 189.1 169 55.0
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 5.6e-46 188.3 196 52.6
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 9.5e-46 187.6 177 54.8
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.2e-45 187.2 175 55.4
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 2.1e-45 186.4 183 50.8
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.1e-45 186.4 180 52.8
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 3.6e-45 185.7 193 51.3
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 6.2e-45 184.9 183 52.5
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.1e-44 184.1 186 54.8
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 5.2e-44 181.8 183 52.5
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 5.2e-44 181.8 176 54.0
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 1.2e-43 180.6 130 71.5
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 2.6e-43 179.5 183 51.4
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 4.4e-43 178.7 176 53.4
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 4.4e-43 178.7 179 55.3
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 7.5e-43 177.9 173 50.3
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 7.5e-43 177.9 187 52.9
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.7e-42 176.8 109 75.2
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 4.9e-42 175.3 188 48.9
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 4.9e-42 175.3 188 48.9
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 6.4e-42 174.9 188 48.9
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 6.4e-42 174.9 188 48.9
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 6.4e-42 174.9 188 48.9
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 6.4e-42 174.9 166 52.4
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 8.3e-42 174.5 172 50.6
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 7.0e-41 171.4 180 51.7
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 1.2e-40 170.6 165 53.3
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 1.6e-40 170.2 199 50.8
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 1.6e-40 170.2 167 54.5
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 2.7e-40 169.5 130 63.1
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 4.6e-40 168.7 204 46.1
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 7.8e-40 167.9 173 49.1
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 1.0e-39 167.5 189 49.2
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 1.0e-39 167.5 177 51.4
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 2.3e-39 166.4 171 49.1
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 5.1e-39 165.2 177 50.8
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 5.1e-39 165.2 147 59.2
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 8.6e-39 164.5 165 50.3
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 8.6e-39 164.5 164 51.8
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 1.1e-38 164.1 194 49.5
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 1.9e-38 163.3 222 43.2
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.9e-38 163.3 194 48.5
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 9.5e-38 161.0 165 52.7
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.2e-37 160.6 201 47.3
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 4.7e-37 158.7 203 44.3
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 5.2e-36 155.2 203 43.8
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.6e-35 152.9 222 43.2
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 4.4e-35 152.1 123 67.5
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 9.9e-35 151.0 138 56.5
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 3.2e-33 146.0 178 43.3
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 5.4e-33 145.2 142 50.7
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 1.0e-31 141.0 178 46.1
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 8.6e-31 137.9 134 51.5
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 3.3e-30 136.0 114 55.3
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 2.1e-29 133.3 309 32.7
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 2.1e-29 133.3 176 45.5
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.1e-29 133.3 176 45.5
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 2.8e-29 132.9 149 45.6
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.8e-29 132.9 176 45.5
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.8e-29 132.9 198 39.4
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 1.1e-28 131.0 165 43.6
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 1.8e-28 130.2 205 42.4
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 5.2e-28 128.6 207 40.6
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 5.2e-28 128.6 171 44.4
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 5.2e-28 128.6 208 39.9
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 8.9e-28 127.9 98 62.2
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.2e-27 127.5 205 40.0
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 3.4e-27 125.9 146 50.0
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 2.2e-26 123.2 182 42.9
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 8.4e-26 121.3 192 42.2
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 2.4e-25 119.8 291 33.7
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 1.6e-24 117.1 137 48.9
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 3.5e-24 115.9 90 58.9
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 6.0e-24 115.2 177 42.9
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 1.0e-23 114.4 131 48.9
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 3.9e-23 112.5 186 39.8
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 3.6e-21 105.9 64 81.2
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 6.2e-21 105.1 96 53.1
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.1e-20 104.4 188 38.8
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.4e-19 99.4 196 33.7
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 5.8e-19 98.6 192 32.8
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 9.9e-19 97.8 164 36.6
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 1.7e-18 97.1 153 36.6
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.9e-18 96.3 92 55.4
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 3.8e-18 95.9 68 66.2
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.8e-12 77.0 135 36.3
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 4.5e-11 72.4 240 25.8
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 1.3e-10 70.9 109 40.4
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.9e-09 67.0 57 57.9
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.2e-08 64.3 126 35.7
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 1.8e-07 60.5 39 64.1


User provided reference genes

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