Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013167 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 2.2e-128 462.2 221 100.0
CSS0006313 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 6.1e-86 321.2 221 76.0
CSS0044513 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 8.0e-46 188.0 144 66.0
CSS0024121 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 3.0e-45 186.0 144 68.1
CSS0038787 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 3.0e-45 186.0 144 68.1
CSS0005612 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 1.2e-44 184.1 143 65.0
CSS0037564 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 4.4e-44 182.2 144 66.0
CSS0044099 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 1.3e-43 180.6 144 64.6
CSS0013398 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.1e-42 177.6 156 55.1
Rhsim11G0067500 Rhododendron simsii HOM05D010774 ORTHO05D013539 1.7e-24 117.1 128 45.3
Hma1.2p1_0174F.1_g076560 Hydrangea macrophylla HOM05D001309 ORTHO05D000385 1.1e-23 114.4 115 48.7
PGSC0003DMG400015737 Solanum tuberosum HOM05D001309 ORTHO05D000385 3.6e-22 109.4 127 46.5
CSS0008409 Camellia sinensis var. sinensis HOM05D014212 ORTHO05D000385 1.2e-20 104.4 128 52.3
PGSC0003DMG400004327 Solanum tuberosum HOM05D001309 ORTHO05D000385 8.3e-19 98.2 112 46.4
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 5.4e-18 95.5 123 37.4
MBI19_g12820_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.3e-15 86.3 126 38.9
MBI14_g07746_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.3e-15 85.9 126 38.1
Rhsim06G0190000 Rhododendron simsii HOM05D001309 ORTHO05D000385 4.3e-15 85.9 165 37.6
Rhsim01G0104600 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.6e-15 85.5 124 41.9
RcHm_v2.0_Chr1g0322131 Rosa chinensis HOM05D005012 ORTHO05D005886 7.3e-15 85.1 153 32.7
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 1.2e-14 84.3 142 35.9
MBI09_g15192_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.6e-14 82.8 127 35.4
MBI17_g16204_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.6e-14 82.8 110 39.1
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 4.7e-14 82.4 148 35.8
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 6.2e-14 82.0 186 33.3
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 6.2e-14 82.0 136 34.6
MBI19_g33997_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.1e-14 81.6 165 35.2
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 8.1e-14 81.6 106 39.6
Rhsim10G0033700 Rhododendron simsii HOM05D001309 ORTHO05D000385 8.1e-14 81.6 166 36.1
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 1.4e-13 80.9 118 38.1
Dinv04171 Davidia involucrata HOM05D010146 ORTHO05D000385 1.8e-13 80.5 127 40.2
MBI01_g25641_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.0e-13 79.3 102 39.2
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.0e-13 79.3 123 35.8
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.2e-13 79.0 102 38.2
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 8.9e-13 78.2 127 39.4
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 1.5e-12 77.4 149 34.9
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 2.0e-12 77.0 123 38.2
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 2.6e-12 76.6 123 36.6
Rhsim11G0004700 Rhododendron simsii HOM05D015585 ORTHO05D000385 2.6e-12 76.6 133 38.3
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.4e-12 76.3 149 34.9
MBI14_g41280_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.4e-12 75.9 102 36.3
Atru.chr3.1415 Acer truncatum HOM05D005012 ORTHO05D005886 5.8e-12 75.5 89 40.4
Cc00_g05340 Coffea canephora HOM05D005012 ORTHO05D005886 5.8e-12 75.5 103 35.9
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.8e-12 75.5 106 34.9
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 7.6e-12 75.1 110 36.4
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 7.6e-12 75.1 101 39.6
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.6e-12 75.1 90 46.7
Sopen08g010550 Solanum pennellii HOM05D001309 ORTHO05D000385 7.6e-12 75.1 92 42.4
MBI12_g24830_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 9.9e-12 74.7 124 34.7
MBI15_g36793_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.7e-11 73.9 157 33.1
MBI14_g27230_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.2e-11 73.6 168 28.0
Atru.chr1.3691 Acer truncatum HOM05D005012 ORTHO05D005886 2.9e-11 73.2 89 39.3
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 4.9e-11 72.4 118 33.9
DCAR_001756 Daucus carota HOM05D001309 ORTHO05D000385 1.1e-10 71.2 124 32.3
ECA240G1654 Erigeron canadensis HOM05D005763 ORTHO05D005970 1.4e-10 70.9 104 37.5
Solyc05g025720.1 Solanum lycopersicum HOM05D063743 ORTHO05D000385 1.4e-10 70.9 94 43.6
MBI19_g00149_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.9e-10 70.5 90 37.8
MBI03_g15598_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 9.2e-10 68.2 111 30.6
Lsat_1_v5_gn_9_120321 Lactuca sativa HOM05D005763 ORTHO05D005970 1.2e-09 67.8 158 33.5
MBI06_g39196_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.6e-09 67.4 102 33.3
AUR62014955 Chenopodium quinoa HOM05D008127 ORTHO05D000385 2.1e-09 67.0 84 40.5
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.1e-09 67.0 97 34.0
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 2.1e-09 67.0 130 33.8
Os04g0609900 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 2.1e-09 67.0 77 37.7
AUR62037964 Chenopodium quinoa HOM05D014060 ORTHO05D000385 2.7e-09 66.6 84 41.7
vmacro07151 Vaccinium macrocarpon HOM05D014212 ORTHO05D000385 3.5e-09 66.2 98 37.8
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 4.6e-09 65.9 92 35.9
DCAR_031676 Daucus carota HOM05D000539 ORTHO05D000233 6.0e-09 65.5 105 36.2
AUR62042512 Chenopodium quinoa HOM05D014060 ORTHO05D000385 7.8e-09 65.1 84 40.5
Prupe.1G266100 Prunus persica HOM05D005012 ORTHO05D000385 7.8e-09 65.1 95 32.6
Prupe.2G006600 Prunus persica HOM05D005012 ORTHO05D000385 7.8e-09 65.1 95 32.6
CSS0016301 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.0e-08 64.7 125 31.2
Glyma.03G071600 Glycine max HOM05D001309 ORTHO05D000385 1.7e-08 63.9 140 28.6
Lj3g0027022 Lotus japonicus HOM05D004615 ORTHO05D000385 1.7e-08 63.9 88 37.5
MBI16_g34941_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.7e-08 63.9 83 37.3
AUR62004861 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.3e-08 63.5 105 34.3
CSS0004008 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.9e-08 62.8 167 25.7
MBI11_g19485_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.9e-08 62.8 152 28.9
Nitab4.5_0002394g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.9e-08 62.8 123 30.9
TAR624G0746 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.1e-08 62.4 142 31.7
Lj2g0010843 Lotus japonicus HOM05D004615 ORTHO05D000385 6.6e-08 62.0 88 37.5
MBI15_g13426_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.6e-08 62.0 81 35.8
MBI18_g39412_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.6e-08 62.0 82 36.6
Nitab4.5_0000999g0130 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.6e-08 62.0 104 33.7
Nitab4.5_0005861g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.6e-08 62.0 125 32.8
TAR629G3448 Trochodendron aralioides HOM05D001163 ORTHO05D001769 6.6e-08 62.0 142 31.7
vmacro00652 Vaccinium macrocarpon HOM05D001309 ORTHO05D000385 6.6e-08 62.0 101 37.6
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 8.6e-08 61.6 125 30.4
Nitab4.5_0028686g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.6e-08 61.6 123 30.9
Prupe.7G055100 Prunus persica HOM05D000539 ORTHO05D000233 8.6e-08 61.6 103 33.0
TAR633G0853 Trochodendron aralioides HOM05D001163 ORTHO05D001769 8.6e-08 61.6 120 32.5
CSS0018077 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.1e-07 61.2 167 25.1
MBI09_g41430_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.1e-07 61.2 90 34.4
PGR044G2648 Punica granatum HOM05D000876 ORTHO05D000285 1.1e-07 61.2 93 35.5
CSS0030327 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.5e-07 60.8 167 25.1
MBI15_g16946_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.5e-07 60.8 85 35.3
SGA_v2.0_scaffold623G53232 Striga asiatica HOM05D004615 ORTHO05D000385 1.5e-07 60.8 95 34.7
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.5e-07 60.8 142 31.0
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.5e-07 60.8 142 31.0
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 1.5e-07 60.8 142 31.0
MBI13_g26301_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.9e-07 60.5 142 30.3
Prupe.1G130900 Prunus persica HOM05D000539 ORTHO05D000233 1.9e-07 60.5 101 31.7
TWI31G0781 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 1.9e-07 60.5 88 35.2
Lsat_1_v5_gn_8_134701 Lactuca sativa HOM05D001309 ORTHO05D000385 2.5e-07 60.1 99 35.4
MBI05_g40697_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.3e-07 59.3 156 28.2
Prupe.3G107500 Prunus persica HOM05D000539 ORTHO05D000233 4.3e-07 59.3 101 31.7
Prupe.4G254500 Prunus persica HOM05D000539 ORTHO05D000233 4.3e-07 59.3 101 31.7
Prupe.2G155700 Prunus persica HOM05D000539 ORTHO05D000233 5.6e-07 58.9 103 32.0
Prupe.4G254700 Prunus persica HOM05D000539 ORTHO05D000233 5.6e-07 58.9 103 32.0
Prupe.7G029100 Prunus persica HOM05D000539 ORTHO05D000592 5.6e-07 58.9 103 32.0
Prupe.8G054500 Prunus persica HOM05D000539 ORTHO05D000592 5.6e-07 58.9 103 32.0
MBI17_g42351_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.3e-07 58.5 86 32.6
Nitab4.5_0004891g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.3e-07 58.5 104 33.7
Nn3g21266 Nelumbo nucifera HOM05D001309 ORTHO05D000385 9.6e-07 58.2 104 34.6
CSS0001231 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.6e-06 57.4 161 26.7
CSS0012868 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.6e-06 57.4 134 31.3
CSS0044969 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.6e-06 57.4 134 30.6
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 1.6e-06 57.4 142 30.3
Nn1g09472 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.1e-06 57.0 99 34.3
RcHm_v2.0_Chr3g0485221 Rosa chinensis HOM05D000539 ORTHO05D000233 2.1e-06 57.0 98 32.7
RcHm_v2.0_Chr4g0414231 Rosa chinensis HOM05D000539 ORTHO05D000233 2.1e-06 57.0 98 32.7
RcHm_v2.0_Chr5g0072061 Rosa chinensis HOM05D000539 ORTHO05D000233 2.1e-06 57.0 98 32.7
SGA_v2.0_scaffold107G30768 Striga asiatica HOM05D004615 ORTHO05D000385 2.1e-06 57.0 84 34.5
SGA_v2.0_scaffold251G45054 Striga asiatica HOM05D004615 ORTHO05D000385 2.1e-06 57.0 99 36.4
vmacro22655 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 2.1e-06 57.0 123 27.6
Dinv05901 Davidia involucrata HOM05D014212 ORTHO05D000385 2.8e-06 56.6 67 46.3
Os02g0129000 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 2.8e-06 56.6 134 29.1
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 2.8e-06 56.6 98 32.7
CSS0013618 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.6e-06 56.2 104 29.8
Os08g0367300 Oryza sativa ssp. japonica HOM05D008576 ORTHO05D000385 3.6e-06 56.2 134 29.1
Zm00001eb027370 Zea mays HOM05D008576 ORTHO05D000385 3.6e-06 56.2 122 29.5
Zm00001eb182790 Zea mays HOM05D008576 ORTHO05D000385 3.6e-06 56.2 122 29.5
Zm00001eb190070 Zea mays HOM05D008576 ORTHO05D000385 3.6e-06 56.2 122 29.5
Zm00001eb267220 Zea mays HOM05D008576 ORTHO05D000385 3.6e-06 56.2 135 28.1
Zm00001eb380870 Zea mays HOM05D008576 ORTHO05D000385 3.6e-06 56.2 135 28.1
CSS0045334 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.7e-06 55.8 157 29.3
DCAR_032097 Daucus carota HOM05D004615 ORTHO05D000385 4.7e-06 55.8 129 31.0
Zm00001eb029070 Zea mays HOM05D008576 ORTHO05D000385 4.7e-06 55.8 122 29.5
Zm00001eb090520 Zea mays HOM05D008576 ORTHO05D000385 4.7e-06 55.8 122 31.1
Zm00001eb092990 Zea mays HOM05D008576 ORTHO05D000385 4.7e-06 55.8 122 29.5
Zm00001eb093010 Zea mays HOM05D008576 ORTHO05D000385 4.7e-06 55.8 122 29.5
Zm00001eb184880 Zea mays HOM05D008576 ORTHO05D000385 4.7e-06 55.8 122 29.5
Zm00001eb333630 Zea mays HOM05D008576 ORTHO05D000385 4.7e-06 55.8 122 29.5
Zm00001eb384730 Zea mays HOM05D008576 ORTHO05D000385 4.7e-06 55.8 122 29.5
Zm00001eb425380 Zea mays HOM05D008576 ORTHO05D000385 4.7e-06 55.8 122 29.5
Zm00001eb438630 Zea mays HOM05D008576 ORTHO05D000385 4.7e-06 55.8 122 29.5
Zm00001eb439020 Zea mays HOM05D008576 ORTHO05D000385 4.7e-06 55.8 122 29.5
CSS0022677 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.2e-06 55.5 134 30.6
ECA247G3253 Erigeron canadensis HOM05D005763 ORTHO05D005970 6.2e-06 55.5 88 33.0
Lj9A299T35 Lonicera japonica HOM05D001309 ORTHO05D000385 6.2e-06 55.5 90 41.1
Nitab4.5_0001128g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.2e-06 55.5 102 34.3
Nitab4.5_0003082g0080 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.2e-06 55.5 121 29.8
Zm00001eb390290 Zea mays HOM05D008576 ORTHO05D000385 6.2e-06 55.5 122 29.5


User provided reference genes

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