Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013141 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 8.2e-114 413.7 202 100.0
CSS0013005 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 3.7e-82 308.5 206 78.2
Actinidia24049 Actinidia chinensis HOM05D005683 ORTHO05D006958 3.3e-62 242.3 196 63.8
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 7.3e-62 241.1 192 65.1
Dinv40458 Davidia involucrata HOM05D005683 ORTHO05D006958 8.9e-60 234.2 192 62.5
Rhsim02G0118200 Rhododendron simsii HOM05D005683 ORTHO05D006958 7.1e-57 224.6 197 60.9
Rhsim02G0118400 Rhododendron simsii HOM05D005683 ORTHO05D006958 7.1e-57 224.6 197 60.9
TAR626G0062 Trochodendron aralioides HOM05D005683 ORTHO05D006958 2.1e-56 223.0 198 57.6
TAR629G3446 Trochodendron aralioides HOM05D005683 ORTHO05D006958 4.6e-56 221.9 197 58.9
GSVIVG01003677001 Vitis vinifera HOM05D005683 ORTHO05D006958 2.5e-54 216.1 172 62.8
Haze_06612 Corylus avellana HOM05D005683 ORTHO05D006958 1.8e-52 209.9 178 60.7
TAR627G0612 Trochodendron aralioides HOM05D005683 ORTHO05D006958 2.3e-52 209.5 196 56.1
vmacro15855 Vaccinium macrocarpon HOM05D005683 ORTHO05D006958 4.0e-52 208.8 233 52.4
Lj2A278T71 Lonicera japonica HOM05D005683 ORTHO05D006958 9.9e-51 204.1 195 55.9
MBI02_g38754_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 9.9e-51 204.1 197 54.3
MBI02_g46153_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 3.7e-50 202.2 197 53.8
MD05G1328900 Malus domestica HOM05D005683 ORTHO05D006958 1.4e-49 200.3 172 59.3
CiPaw.10G115800 Carya illinoinensis HOM05D005683 ORTHO05D006958 2.4e-49 199.5 185 56.2
MD10G1305800 Malus domestica HOM05D005683 ORTHO05D006958 7.1e-49 198.0 172 58.7
Potri.011G040100 Populus trichocarpa HOM05D005683 ORTHO05D006958 2.1e-48 196.4 178 57.3
COL.COLO4_31635 Corchorus olitorius HOM05D005683 ORTHO05D006958 6.0e-48 194.9 175 57.1
Prupe.4G033900 Prunus persica HOM05D005683 ORTHO05D006958 3.9e-47 192.2 170 57.1
Cc02_g12200 Coffea canephora HOM05D005683 ORTHO05D006958 1.5e-46 190.3 193 51.8
Nn1g03823 Nelumbo nucifera HOM05D005683 ORTHO05D006958 1.5e-46 190.3 192 52.6
Lj1A1216T22 Lonicera japonica HOM05D005683 ORTHO05D006958 3.3e-46 189.1 172 57.0
QL05p080525 Quercus lobata HOM05D005683 ORTHO05D006958 3.3e-46 189.1 179 55.3
AUR62012512 Chenopodium quinoa HOM05D005683 ORTHO05D006958 4.3e-46 188.7 163 59.5
Atru.chr10.2035 Acer truncatum HOM05D005683 ORTHO05D006958 9.6e-46 187.6 169 56.8
RcHm_v2.0_Chr5g0005711 Rosa chinensis HOM05D005683 ORTHO05D006958 6.2e-45 184.9 172 52.9
Gohir.A05G166700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 8.1e-45 184.5 179 53.6
Gohir.D05G169700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 8.1e-45 184.5 179 53.6
FAN21G2210 Fragaria x ananassa HOM05D005683 ORTHO05D006958 1.8e-44 183.3 172 53.5
FvH4_3g03670 Fragaria vesca HOM05D005683 ORTHO05D006958 2.4e-44 183.0 172 52.9
FAN11G3671 Fragaria x ananassa HOM05D005683 ORTHO05D006958 2.4e-44 183.0 172 52.9
FAN16G0586 Fragaria x ananassa HOM05D005683 ORTHO05D006958 2.4e-44 183.0 172 52.9
FAN25G1197 Fragaria x ananassa HOM05D005683 ORTHO05D006958 2.4e-44 183.0 172 53.5
Gorai.009G174900 Gossypium raimondii HOM05D005683 ORTHO05D006958 2.4e-44 183.0 179 53.6
Ciclev10016376m.g Citrus clementina HOM05D005683 ORTHO05D006958 6.8e-44 181.4 172 55.2
Manes.17G032900 Manihot esculenta HOM05D005683 ORTHO05D006958 6.8e-44 181.4 164 57.3
MSTRG.7277 Avicennia marina HOM05D005683 ORTHO05D006958 1.5e-43 180.3 192 49.0
Ah.09g236340 Amaranthus hybridus HOM05D005683 ORTHO05D006958 2.6e-43 179.5 164 56.1
Lalb_Chr09g0327231 Lupinus albus HOM05D005683 ORTHO05D006958 2.6e-43 179.5 166 54.8
TWI38G0326 Tripterygium wilfordii HOM05D005683 ORTHO05D006958 2.6e-43 179.5 159 56.6
CiPaw.09G156400 Carya illinoinensis HOM05D005683 ORTHO05D006958 1.7e-42 176.8 182 51.1
Lj6g0011505 Lotus japonicus HOM05D005683 ORTHO05D006958 2.9e-42 176.0 174 53.4
arahy.Tifrunner.gnm1.ann1.1EQ2T2 Arachis hypogaea HOM05D005683 ORTHO05D006958 3.8e-42 175.6 171 53.2
PSO541G3127 Papaver somniferum HOM05D005683 ORTHO05D006958 4.9e-42 175.3 196 46.9
Potri.004G026700 Populus trichocarpa HOM05D005683 ORTHO05D006958 6.4e-42 174.9 178 51.7
arahy.Tifrunner.gnm1.ann1.YX67LP Arachis hypogaea HOM05D005683 ORTHO05D006958 8.4e-42 174.5 171 52.6
SGA_v2.0_scaffold114G31992 Striga asiatica HOM05D005683 ORTHO05D006958 1.1e-41 174.1 193 48.7
PGR042G1297 Punica granatum HOM05D005683 ORTHO05D006958 1.4e-41 173.7 174 52.9
PSO675G7592 Papaver somniferum HOM05D005683 ORTHO05D006958 2.4e-41 172.9 196 47.4
Hund21293 Selenicereus undatus HOM05D005683 ORTHO05D006958 2.1e-40 169.9 172 50.6
Sc17g0006760 Simmondsia chinensis HOM05D005683 ORTHO05D006958 2.1e-40 169.9 161 55.3
Cpa.g.sc27.157 Carica papaya HOM05D005683 ORTHO05D006958 2.7e-40 169.5 172 54.7
Gohir.D10G020000 Gossypium hirsutum HOM05D005683 ORTHO05D006958 2.7e-40 169.5 175 50.9
VMungo0251G1023 Vigna mungo HOM05D005683 ORTHO05D006958 4.6e-40 168.7 163 52.1
Manes.16G019184 Manihot esculenta HOM05D005683 ORTHO05D006958 6.0e-40 168.3 166 53.0
Gorai.011G021200 Gossypium raimondii HOM05D005683 ORTHO05D006958 7.8e-40 167.9 175 50.9
Lsat_1_v5_gn_7_20320 Lactuca sativa HOM05D005683 ORTHO05D006958 1.0e-39 167.5 179 52.5
Gohir.A10G019100 Gossypium hirsutum HOM05D005683 ORTHO05D006958 1.3e-39 167.2 175 50.3
MELO3C007336.2 Cucumis melo HOM05D005683 ORTHO05D006958 3.0e-39 166.0 179 50.8
Lalb_Chr18g0060021 Lupinus albus HOM05D005683 ORTHO05D006958 1.1e-38 164.1 178 47.8
CsaV3_6G049570 Cucumis sativus L. HOM05D005683 ORTHO05D006958 1.9e-38 163.3 179 50.3
Nitab4.5_0005620g0030 Nicotiana tabacum HOM05D005683 ORTHO05D006958 1.9e-38 163.3 171 50.9
Sed0004151 Sechium edule HOM05D005683 ORTHO05D006958 2.5e-38 162.9 168 51.8
TPR.G15376 Trifolium pratense HOM05D005683 ORTHO05D006958 3.3e-38 162.5 161 53.4
Phvul.002G220600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 4.3e-38 162.2 168 50.0
Hund23579 Selenicereus undatus HOM05D005683 ORTHO05D006958 7.3e-38 161.4 161 50.9
Nitab4.5_0000649g0210 Nicotiana tabacum HOM05D005683 ORTHO05D006958 1.3e-37 160.6 167 50.9
Glyma.13G247700 Glycine max HOM05D005683 ORTHO05D006958 1.6e-37 160.2 177 48.0
Peaxi162Scf01035g00114 Petunia axillaris HOM05D005683 ORTHO05D006958 2.8e-37 159.5 167 50.9
Sopen02g024190 Solanum pennellii HOM05D005683 ORTHO05D006958 3.6e-37 159.1 164 50.0
Solyc02g079390.4 Solanum lycopersicum HOM05D005683 ORTHO05D006958 4.8e-37 158.7 164 49.4
Medtr4g091550 Medicago truncatula HOM05D005683 ORTHO05D006958 1.1e-36 157.5 162 51.9
Thecc.06G202400 Theobroma cacao HOM05D005683 ORTHO05D006958 1.8e-36 156.8 167 50.9
ClCG01G022390 Citrullus lanatus HOM05D005683 ORTHO05D006958 2.4e-36 156.4 179 48.0
ECA236G4035 Erigeron canadensis HOM05D005683 ORTHO05D006958 2.4e-36 156.4 167 50.9
HanXRQChr15g0482541 Helianthus annuus HOM05D005683 ORTHO05D006958 2.4e-36 156.4 167 50.9
Sed0027497 Sechium edule HOM05D005683 ORTHO05D006958 2.4e-36 156.4 179 49.7
PGSC0003DMG400022348 Solanum tuberosum HOM05D005683 ORTHO05D006958 3.1e-36 156.0 164 49.4
CAN.G424.37 Capsicum annuum HOM05D005683 ORTHO05D006958 5.3e-36 155.2 164 50.0
DCAR_004160 Daucus carota HOM05D005683 ORTHO05D006958 5.3e-36 155.2 166 48.8
CANSAT56G4448 Cannabis sativa HOM05D005683 ORTHO05D006958 1.5e-35 153.7 161 48.4
AL1G22470 Arabidopsis lyrata HOM05D005683 ORTHO05D006958 6.4e-34 148.3 166 50.0
THA.LOC104818970 Tarenaya hassleriana HOM05D005683 ORTHO05D006958 8.4e-34 147.9 174 47.1
Migut.H01529 Erythranthe guttata HOM05D005683 ORTHO05D006958 1.1e-33 147.5 188 45.7
BcaC05g25012 Brassica carinata HOM05D005683 ORTHO05D006958 1.9e-33 146.7 168 48.2
Carub.0001s1101 Capsella rubella HOM05D005683 ORTHO05D006958 1.9e-33 146.7 168 48.2
Aa31LG1G3330 Aethionema arabicum HOM05D005683 ORTHO05D006958 2.4e-33 146.4 168 47.0
Oeu021580.1 Olea europaea HOM05D005683 ORTHO05D006958 9.3e-33 144.4 102 66.7
AT1G11380 Arabidopsis thaliana HOM05D005683 ORTHO05D006958 1.2e-32 144.1 165 46.1
Zm00001eb323790 Zea mays HOM05D005683 ORTHO05D006958 3.5e-32 142.5 178 43.3
CARHR011620 Cardamine hirsuta HOM05D005683 ORTHO05D006958 4.6e-32 142.1 168 46.4
A06p08000 Brassica napus HOM05D005683 ORTHO05D006958 6.0e-32 141.7 168 47.0
BraA06t23999Z Brassica rapa HOM05D005683 ORTHO05D006958 6.0e-32 141.7 168 47.0
Ca_18471_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 1.0e-31 141.0 163 47.9
HPP92_000912 Vanilla planifolia HOM05D005683 ORTHO05D006958 3.0e-31 139.4 195 43.1
CDE02G0678 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 6.6e-31 138.3 196 40.8
C05p09600 Brassica napus HOM05D005683 ORTHO05D006958 1.1e-30 137.5 168 46.4
BolC5t29702H Brassica oleracea HOM05D005683 ORTHO05D006958 1.1e-30 137.5 168 46.4
Duzib192G0920 Durio zibethinus HOM05D005683 ORTHO05D006958 1.1e-30 137.5 84 71.4
Duzib235G0662 Durio zibethinus HOM05D005683 ORTHO05D006958 5.6e-30 135.2 83 71.1
AUR62014686 Chenopodium quinoa HOM05D005683 ORTHO05D006958 7.3e-30 134.8 68 85.3
Migut.M01228 Erythranthe guttata HOM05D005683 ORTHO05D006958 1.3e-29 134.0 173 45.1
Eucgr.E03677 Eucalyptus grandis HOM05D005683 ORTHO05D006958 1.3e-29 134.0 81 71.6
unitig_748.g7566 Utricularia gibba HOM05D005683 ORTHO05D006958 3.6e-29 132.5 172 44.2
EL10Ac8g19981 Beta vulgaris HOM05D005683 ORTHO05D006958 4.8e-29 132.1 71 78.9
Lalb_Chr05g0218101 Lupinus albus HOM05D005683 ORTHO05D006958 4.0e-28 129.0 142 45.8
VMungo0540G1177 Vigna mungo HOM05D005683 ORTHO05D006958 4.0e-28 129.0 82 67.1
ATR1132G083 Amborella trichopoda HOM05D005683 ORTHO05D006958 5.3e-28 128.6 142 47.2
Glyma.15G066100 Glycine max HOM05D005683 ORTHO05D006958 1.2e-27 127.5 157 42.7
Lj4g0024466 Lotus japonicus HOM05D005683 ORTHO05D006958 4.5e-27 125.6 151 45.0
Phvul.006G193600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 1.7e-26 123.6 155 41.9
Glyma.07G188900 Glycine max HOM05D005683 ORTHO05D006958 2.9e-26 122.9 138 44.9
TPR.G36735 Trifolium pratense HOM05D005683 ORTHO05D006958 2.9e-26 122.9 71 74.6
Medtr2g011490 Medicago truncatula HOM05D005683 ORTHO05D006958 3.8e-26 122.5 71 73.2
Psat1g209480 Pisum sativum HOM05D005683 ORTHO05D006958 9.3e-25 117.9 144 42.4
Ca_00226_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 2.7e-24 116.3 66 74.2
Sp1g10010 Schrenkiella parvula HOM05D005683 ORTHO05D006958 3.0e-23 112.8 73 69.9
arahy.Tifrunner.gnm1.ann1.NC80VA Arachis hypogaea HOM05D005683 ORTHO05D006958 7.4e-22 108.2 153 40.5
arahy.Tifrunner.gnm1.ann1.B3SD72 Arachis hypogaea HOM05D005683 ORTHO05D006958 2.4e-20 103.2 143 39.9
Pp3c21_1800 Physcomitrium patens HOM05D005683 ORTHO05D006958 3.0e-15 86.3 199 30.2
Glyma.08G060400 Glycine max HOM05D005683 ORTHO05D006958 1.8e-12 77.0 118 39.8
Pp3c18_19760 Physcomitrium patens HOM05D005683 ORTHO05D006958 2.6e-11 73.2 147 31.3
Prupe.5G244100 Prunus persica HOM05D005683 ORTHO05D006958 1.3e-10 70.9 86 45.3
TAR629G2478 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.7e-10 70.5 54 70.4


User provided reference genes

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