Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 4.2e-98 361.3 175 100.0
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 3.2e-50 202.2 165 62.4
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 9.4e-50 200.7 166 65.1
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.5e-42 176.0 178 57.3
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 8.3e-30 134.4 151 49.0
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.6e-20 103.6 145 42.1
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 2.3e-19 99.8 137 43.1
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 8.6e-19 97.8 143 39.9
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.9e-18 96.7 143 40.6
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 4.7e-17 92.0 145 38.6
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.1e-16 90.9 165 37.6
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.1e-16 90.9 165 37.6
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 3.1e-16 89.4 141 37.6
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 2.6e-15 86.3 166 35.5
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 7.6e-15 84.7 133 37.6
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 7.6e-15 84.7 133 37.6
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 9.9e-15 84.3 133 37.6
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-14 84.0 142 38.0
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 2.2e-14 83.2 129 38.0
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-14 82.8 145 34.5
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 3.7e-14 82.4 133 34.6
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 8.4e-14 81.3 162 32.7
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 3.2e-13 79.3 144 36.8
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 7.1e-13 78.2 133 33.1
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 7.1e-13 78.2 129 34.1
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 7.1e-13 78.2 129 34.1
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 7.1e-13 78.2 91 45.1
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-12 77.4 164 33.5
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.5e-12 75.9 132 34.1
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.5e-12 75.9 145 33.1
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.0e-12 75.1 130 36.2
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 7.8e-12 74.7 138 32.6
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 1.0e-11 74.3 128 32.8
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 1.7e-11 73.6 128 32.8
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.6e-11 71.6 145 31.7
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.5e-10 70.5 127 38.6
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.9e-10 70.1 145 31.0
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.5e-10 69.7 127 33.9
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.5e-10 69.7 124 38.7
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 3.3e-10 69.3 169 32.0
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 4.3e-10 68.9 166 31.3
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.3e-10 68.2 146 35.6
Ah.02g112980 Amaranthus hybridus HOM05D014146 ORTHO05D015816 1.2e-09 67.4 155 30.3
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-09 67.0 134 32.8
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.7e-09 65.5 101 40.6
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.7e-09 65.5 89 42.7
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 4.7e-09 65.5 115 33.0
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.7e-09 65.5 82 43.9
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 4.7e-09 65.5 82 43.9
EL10Ac3g05478 Beta vulgaris HOM05D009434 ORTHO05D011504 1.1e-08 64.3 91 42.9
Duzib128G0495 Durio zibethinus HOM05D014226 ORTHO05D016989 1.4e-08 63.9 132 34.1
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-08 63.9 82 43.9
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-08 63.9 82 43.9
Duzib128G0597 Durio zibethinus HOM05D014226 ORTHO05D016989 1.8e-08 63.5 140 32.9
Duzib128G0362 Durio zibethinus HOM05D014226 ORTHO05D016989 3.1e-08 62.8 140 32.9
Duzib128G0451 Durio zibethinus HOM05D014226 ORTHO05D016989 8.9e-08 61.2 140 32.1
Duzib128G1533 Durio zibethinus HOM05D014226 ORTHO05D016989 8.9e-08 61.2 140 32.1
Duzib151G0560 Durio zibethinus HOM05D014226 ORTHO05D016989 8.9e-08 61.2 140 32.1
Duzib128G0103 Durio zibethinus HOM05D014226 ORTHO05D016989 1.5e-07 60.5 136 30.1
Duzib128G0130 Durio zibethinus HOM05D014226 ORTHO05D016989 2.0e-07 60.1 136 31.6
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.0e-07 60.1 89 40.4
Duzib128G0388 Durio zibethinus HOM05D014226 ORTHO05D016989 2.6e-07 59.7 153 30.7
Duzib114G0748 Durio zibethinus HOM05D009645 ORTHO05D019099 4.4e-07 58.9 119 31.9
AUR62035115 Chenopodium quinoa HOM05D009434 ORTHO05D011504 7.6e-07 58.2 126 32.5
AUR62035116 Chenopodium quinoa HOM05D009434 ORTHO05D011504 7.6e-07 58.2 126 32.5
AUR62035119 Chenopodium quinoa HOM05D009434 ORTHO05D011504 7.6e-07 58.2 126 32.5
AUR62039295 Chenopodium quinoa HOM05D009434 ORTHO05D011504 7.6e-07 58.2 126 32.5
AUR62039296 Chenopodium quinoa HOM05D009434 ORTHO05D011504 7.6e-07 58.2 126 32.5
AUR62039299 Chenopodium quinoa HOM05D009434 ORTHO05D011504 7.6e-07 58.2 126 32.5
AUR62039300 Chenopodium quinoa HOM05D009434 ORTHO05D011504 7.6e-07 58.2 126 32.5
AUR62044534 Chenopodium quinoa HOM05D009434 ORTHO05D011504 7.6e-07 58.2 126 32.5
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 9.9e-07 57.8 121 33.9
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.9e-07 57.8 100 32.0
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 2.2e-06 56.6 68 44.1
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 4.9e-06 55.5 151 28.5
AUR62044531 Chenopodium quinoa HOM05D009434 ORTHO05D011504 6.4e-06 55.1 119 32.8
Gohir.D05G285700 Gossypium hirsutum HOM05D009645 ORTHO05D011514 6.4e-06 55.1 124 31.5
Gorai.009G300700 Gossypium raimondii HOM05D009645 ORTHO05D011514 6.4e-06 55.1 124 31.5


User provided reference genes

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