Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 2.9e-44 181.4 87 100.0
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 2.4e-22 108.6 60 85.0
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 3.2e-22 108.2 62 83.9
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 3.0e-20 101.7 60 80.0
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 1.9e-19 99.0 55 80.0
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 1.6e-18 95.9 55 78.2
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 2.8e-18 95.1 55 78.2
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 3.6e-18 94.7 59 74.6
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 8.1e-18 93.6 55 80.0
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.4e-17 92.8 56 80.4
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 4.0e-17 91.3 55 76.4
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 6.8e-17 90.5 52 76.9
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 1.5e-16 89.4 55 74.5
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 1.5e-16 89.4 55 76.4
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 1.5e-16 89.4 52 76.9
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 2.0e-16 89.0 55 80.0
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 2.0e-16 89.0 60 68.3
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 4.4e-16 87.8 55 74.5
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 5.8e-16 87.4 57 66.7
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 5.8e-16 87.4 53 73.6
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 5.8e-16 87.4 52 76.9
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 2.9e-15 85.1 53 71.7
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 3.8e-15 84.7 55 70.9
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 4.9e-15 84.3 54 68.5
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 4.9e-15 84.3 55 65.5
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 4.9e-15 84.3 55 70.9
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 1.1e-14 83.2 52 69.2
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 1.1e-14 83.2 58 60.3
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 2.4e-14 82.0 52 67.3
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 3.2e-14 81.6 56 60.7
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 5.4e-14 80.9 49 75.5
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 5.4e-14 80.9 51 68.6
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 5.4e-14 80.9 51 68.6
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 2.1e-13 79.0 51 66.7
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 2.7e-13 78.6 59 62.7
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.7e-13 78.6 59 62.7
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 3.5e-13 78.2 57 66.7
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 1.3e-12 76.3 57 63.2
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 3.0e-12 75.1 58 62.1
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 6.6e-12 73.9 57 61.4
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 6.6e-12 73.9 58 60.3
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 6.6e-12 73.9 58 60.3
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 8.7e-12 73.6 57 63.2
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 2.5e-11 72.0 60 61.7
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 3.3e-11 71.6 54 59.3
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 5.6e-11 70.9 58 58.6
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 2.8e-10 68.6 58 58.6
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 2.8e-10 68.6 58 58.6
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 9.0e-09 63.5 36 77.8
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 1.5e-08 62.8 38 73.7
SHI31744 Sapria himalayana HOM05D004031 ORTHO05D011186 1.3e-07 59.7 36 72.2
Hund06156 Selenicereus undatus HOM05D000159 ORTHO05D011186 2.2e-07 58.9 38 65.8
SEGI_01182 Sequoiadendron giganteum HOM05D004031 ORTHO05D011186 2.2e-07 58.9 34 76.5
Sed0004834 Sechium edule HOM05D004031 ORTHO05D011186 6.4e-07 57.4 63 49.2
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 7.1e-06 53.9 34 64.7
Mapoly0005s0168 Marchantia polymorpha HOM05D004031 ORTHO05D011186 7.1e-06 53.9 51 41.2


User provided reference genes

Program Settings