Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 2.0e-170 602.4 319 100.0
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 2.5e-165 585.5 318 96.9
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 1.1e-120 437.2 315 75.2
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 7.1e-120 434.5 315 75.9
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 1.1e-112 410.6 354 66.7
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 2.3e-110 402.9 341 67.2
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 6.9e-107 391.3 303 69.0
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 5.8e-106 388.3 314 67.5
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.3e-105 387.1 314 67.5
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.4e-104 383.6 315 64.8
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 3.2e-104 382.5 303 68.6
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 3.5e-103 379.0 304 65.5
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 7.9e-103 377.9 315 63.8
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 5.1e-102 375.2 312 67.6
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 1.2e-95 354.0 317 63.7
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 1.3e-94 350.5 332 61.7
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 1.8e-94 350.1 314 63.1
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 6.7e-94 348.2 317 63.4
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 1.1e-91 340.9 314 62.1
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 1.8e-91 340.1 312 59.3
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 3.1e-91 339.3 369 55.6
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 8.4e-89 331.3 336 58.6
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 2.5e-88 329.7 308 61.4
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 4.6e-87 325.5 315 60.0
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 8.7e-86 321.2 343 56.6
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.5e-85 320.5 293 63.8
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.9e-85 320.1 316 57.9
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 1.6e-84 317.0 316 57.6
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 2.2e-84 316.6 231 73.6
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 1.8e-83 313.5 303 59.4
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 2.4e-83 313.2 318 58.8
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 2.4e-83 313.2 316 57.0
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 6.9e-83 311.6 310 57.1
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 2.6e-82 309.7 293 60.4
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 2.6e-82 309.7 318 57.2
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 1.3e-81 307.4 314 56.4
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 2.9e-81 306.2 315 57.1
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 3.8e-81 305.8 302 57.0
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 5.0e-81 305.4 317 58.4
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 5.0e-81 305.4 292 59.2
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.1e-80 304.3 314 54.5
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 1.9e-80 303.5 281 61.9
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 5.5e-80 302.0 318 58.2
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 9.4e-80 301.2 343 53.4
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 9.4e-80 301.2 308 56.5
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 9.4e-80 301.2 308 57.1
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 1.6e-79 300.4 317 56.8
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 2.7e-79 299.7 327 55.7
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 4.6e-79 298.9 316 57.0
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 6.1e-79 298.5 302 57.6
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.8e-78 297.0 312 54.8
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.3e-78 296.6 293 58.4
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 3.9e-78 295.8 303 58.4
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 6.7e-78 295.0 293 58.0
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.0e-77 293.5 313 55.9
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 2.5e-77 293.1 293 58.0
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 5.7e-77 292.0 260 65.4
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 9.7e-77 291.2 314 54.1
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 1.3e-76 290.8 317 54.6
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 6.3e-76 288.5 316 54.7
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 1.4e-75 287.3 332 53.6
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 5.3e-75 285.4 343 49.6
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.5e-74 283.9 307 55.0
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 4.5e-74 282.3 313 54.3
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.0e-73 281.2 290 57.2
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.7e-73 280.4 315 54.3
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 1.4e-72 277.3 292 53.8
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 5.5e-72 275.4 290 56.9
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 7.2e-72 275.0 301 54.8
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.2e-71 274.2 314 49.4
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.2e-71 274.2 291 56.7
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 3.6e-71 272.7 300 51.3
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 3.6e-71 272.7 303 54.8
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 4.7e-71 272.3 308 52.3
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 6.1e-71 271.9 315 50.8
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 6.1e-71 271.9 301 54.5
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 1.8e-70 270.4 298 51.0
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 7.4e-69 265.0 296 49.3
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 1.7e-68 263.8 296 52.0
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 3.7e-68 262.7 304 51.0
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 3.1e-67 259.6 307 51.1
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 3.1e-67 259.6 314 50.0
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 4.1e-67 259.2 263 55.9
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.2e-66 257.7 238 58.0
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.0e-66 256.9 305 49.8
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 7.7e-66 255.0 360 47.2
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 1.3e-65 254.2 323 50.8
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 6.5e-65 251.9 317 50.8
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.1e-64 251.1 308 48.4
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 1.6e-63 247.3 352 45.7
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 2.1e-63 246.9 305 48.9
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 3.6e-63 246.1 235 55.7
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.8e-62 243.8 298 50.3
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 1.8e-62 243.8 305 47.2
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 5.2e-62 242.3 240 58.3
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 5.2e-62 242.3 241 58.1
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 4.4e-61 239.2 319 45.1
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 7.5e-61 238.4 317 46.1
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 7.5e-61 238.4 224 59.8
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 1.4e-59 234.2 269 50.9
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.8e-59 233.8 286 49.0
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 4.1e-59 232.6 289 47.4
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 1.2e-58 231.1 308 45.5
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 5.9e-58 228.8 256 51.2
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 6.5e-57 225.3 305 45.2
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 6.5e-57 225.3 303 44.6
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 8.5e-57 224.9 279 47.7
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 4.2e-56 222.6 290 50.7
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 5.5e-56 222.2 305 45.2
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 3.6e-55 219.5 312 41.3
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 4.7e-55 219.2 314 43.0
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 1.4e-54 217.6 314 41.4
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 1.8e-54 217.2 314 41.4
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 5.2e-54 215.7 313 41.2
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 1.2e-53 214.5 294 44.6
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 2.6e-53 213.4 190 61.6
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 3.4e-53 213.0 319 42.3
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 3.4e-53 213.0 304 42.8
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 5.4e-51 205.7 306 40.8
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 7.0e-51 205.3 306 40.5
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 3.5e-50 203.0 194 56.2
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 7.7e-50 201.8 314 39.8
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 7.7e-50 201.8 291 42.6
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 8.5e-49 198.4 238 49.6
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 2.0e-45 187.2 288 42.7
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.8e-43 180.6 307 39.7
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 2.3e-41 173.7 217 46.5
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.7e-36 157.5 294 35.4
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 2.2e-36 157.1 309 35.0
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 2.2e-36 157.1 319 35.1
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.2e-35 153.3 137 56.2
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.7e-33 147.5 224 44.6
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 5.0e-33 146.0 218 40.4
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 1.9e-32 144.1 226 36.7
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 2.0e-29 134.0 161 43.5
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 3.4e-29 133.3 269 33.5
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 1.4e-27 127.9 149 49.0
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 2.7e-26 123.6 197 42.6
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 4.4e-21 106.3 73 72.6
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 5.8e-21 105.9 135 43.0
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 6.4e-20 102.4 192 34.9
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 2.1e-18 97.4 225 30.7
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 1.3e-17 94.7 233 33.9
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 3.9e-17 93.2 226 32.7
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 3.6e-15 86.7 96 56.2
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 1.4e-14 84.7 182 32.4
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.9e-12 77.0 201 27.9
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 3.7e-12 76.6 178 25.8
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 7.1e-11 72.4 200 33.0
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.6e-10 71.2 111 36.0
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 3.0e-09 67.0 100 41.0
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 5.6e-08 62.8 262 26.7


User provided reference genes

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