Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.7e-26 119.8 55 100.0
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.5e-21 103.2 62 83.9
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.5e-21 103.2 62 83.9
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.0e-15 84.0 53 81.1
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.9e-15 83.2 51 82.4
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 6.9e-15 83.2 51 82.4
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 7.6e-14 79.7 51 80.4
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 7.6e-14 79.7 51 80.4
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 7.6e-14 79.7 51 80.4
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 7.6e-14 79.7 51 80.4
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 7.6e-14 79.7 51 80.4
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 7.6e-14 79.7 51 80.4
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.0e-13 79.3 51 78.4
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.3e-13 79.0 51 80.4
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.3e-13 79.0 51 80.4
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.3e-13 79.0 51 80.4
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.7e-13 78.6 51 78.4
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 1.7e-13 78.6 51 78.4
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 1.7e-13 78.6 51 78.4
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 1.7e-13 78.6 51 78.4
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.2e-13 78.2 51 80.4
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 2.2e-13 78.2 51 78.4
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 2.2e-13 78.2 51 78.4
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 2.2e-13 78.2 51 78.4
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 2.2e-13 78.2 51 76.5
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 2.9e-13 77.8 51 74.5
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 6.5e-13 76.6 51 76.5
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 6.5e-13 76.6 51 78.4
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 6.5e-13 76.6 51 76.5
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 8.4e-13 76.3 49 79.6
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 1.1e-12 75.9 51 74.5
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 1.1e-12 75.9 51 76.5
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-12 75.9 51 76.5
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-12 75.9 51 76.5
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-12 75.9 51 76.5
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-12 75.9 51 76.5
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 1.1e-12 75.9 51 72.5
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 1.1e-12 75.9 51 74.5
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.4e-12 75.5 51 72.5
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 1.4e-12 75.5 51 72.5
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.9e-12 75.1 51 74.5
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 1.9e-12 75.1 51 74.5
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 1.9e-12 75.1 51 76.5
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.5e-12 74.7 51 74.5
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 2.5e-12 74.7 51 76.5
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 3.2e-12 74.3 51 72.5
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 3.2e-12 74.3 51 74.5
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 3.2e-12 74.3 51 74.5
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 3.2e-12 74.3 51 74.5
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 3.2e-12 74.3 51 74.5
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 4.2e-12 73.9 51 72.5
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 4.2e-12 73.9 51 72.5
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 4.2e-12 73.9 51 74.5
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 5.5e-12 73.6 51 72.5
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 5.5e-12 73.6 51 70.6
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 5.5e-12 73.6 51 70.6
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 7.1e-12 73.2 51 72.5
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 7.1e-12 73.2 51 74.5
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 7.1e-12 73.2 51 70.6
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 7.1e-12 73.2 51 72.5
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 9.3e-12 72.8 51 70.6
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 9.3e-12 72.8 51 72.5
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 1.2e-11 72.4 51 70.6
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 1.2e-11 72.4 51 70.6
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 1.2e-11 72.4 51 70.6
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.2e-11 72.4 51 70.6
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.6e-11 72.0 51 72.5
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 1.6e-11 72.0 51 72.5
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.1e-11 71.6 51 70.6
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 2.1e-11 71.6 51 70.6
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 2.1e-11 71.6 51 72.5
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 2.7e-11 71.2 51 72.5
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 3.5e-11 70.9 50 70.0
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 3.5e-11 70.9 51 70.6
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 4.6e-11 70.5 51 70.6
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 6.1e-11 70.1 51 68.6
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 6.1e-11 70.1 51 70.6
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 7.9e-11 69.7 51 72.5
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.0e-10 69.3 34 88.2
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.0e-10 69.3 51 72.5
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.0e-10 69.3 51 72.5
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.0e-10 69.3 51 72.5
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 1.0e-10 69.3 51 70.6
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 1.0e-10 69.3 51 70.6
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 1.0e-10 69.3 51 70.6
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 1.0e-10 69.3 51 70.6
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 1.3e-10 68.9 51 70.6
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 1.3e-10 68.9 51 70.6
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.3e-10 68.9 33 90.9
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 2.3e-10 68.2 51 68.6
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 2.3e-10 68.2 51 70.6
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.0e-10 67.8 51 66.7
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.0e-10 67.8 51 66.7
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 3.0e-10 67.8 51 66.7
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 3.0e-10 67.8 51 66.7
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 6.7e-10 66.6 49 71.4
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 6.7e-10 66.6 49 71.4
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 1.1e-09 65.9 51 68.6
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 1.5e-09 65.5 34 82.4
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 1.9e-09 65.1 49 71.4
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 1.9e-09 65.1 51 70.6
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 1.9e-09 65.1 49 69.4
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 2.5e-09 64.7 34 79.4
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 3.3e-09 64.3 51 64.7
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 3.3e-09 64.3 49 67.3
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 4.3e-09 63.9 51 64.7
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 4.3e-09 63.9 51 64.7
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 4.3e-09 63.9 51 62.7
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 5.7e-09 63.5 51 62.7
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 5.7e-09 63.5 51 62.7
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 5.7e-09 63.5 51 62.7
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 5.7e-09 63.5 51 62.7
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 2.2e-08 61.6 51 66.7
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 2.2e-08 61.6 51 62.7
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 2.8e-08 61.2 51 62.7
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 3.7e-08 60.8 51 56.9
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 4.8e-08 60.5 51 60.8
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 4.8e-08 60.5 51 62.7
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 4.8e-08 60.5 51 62.7
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 1.8e-07 58.5 51 60.8
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 3.1e-07 57.8 52 55.8
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 6.9e-07 56.6 61 55.7
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.0e-05 52.8 51 54.9


User provided reference genes

Program Settings