Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.8e-187 659.1 326 100.0
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.2e-136 488.8 393 68.7
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.2e-136 488.8 393 68.7
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 4.5e-114 415.2 392 57.9
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 1.7e-113 413.3 367 60.2
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 2.3e-113 412.9 317 67.5
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 3.8e-113 412.1 368 61.1
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 1.5e-112 410.2 365 60.3
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 4.3e-112 408.7 387 58.4
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 5.6e-112 408.3 380 57.6
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 9.5e-112 407.5 389 58.1
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 9.5e-112 407.5 316 66.5
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 1.6e-111 406.8 389 57.3
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 2.1e-111 406.4 315 66.3
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 2.8e-111 406.0 389 58.1
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 4.7e-111 405.2 367 59.7
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 4.7e-111 405.2 326 64.7
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.4e-110 403.7 365 58.9
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.8e-110 403.3 316 65.5
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 5.2e-110 401.7 316 65.2
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 8.9e-110 401.0 319 64.6
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.2e-109 400.6 365 58.4
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 2.0e-109 399.8 390 56.9
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 2.6e-109 399.4 387 56.8
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 3.4e-109 399.1 364 58.8
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 7.5e-109 397.9 389 56.0
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 9.8e-109 397.5 371 56.9
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.3e-108 397.1 362 59.4
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 1.7e-108 396.7 315 65.4
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 2.2e-108 396.4 315 64.8
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 3.7e-108 395.6 389 55.8
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 6.4e-108 394.8 361 57.6
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 8.3e-108 394.4 387 56.6
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 1.1e-107 394.0 318 62.9
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 1.4e-107 393.7 313 64.5
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 1.8e-107 393.3 390 54.9
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 1.8e-107 393.3 382 56.3
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 2.4e-107 392.9 316 63.6
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 3.2e-107 392.5 368 57.6
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 4.1e-107 392.1 369 56.6
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 5.4e-107 391.7 377 56.2
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 7.0e-107 391.3 361 57.1
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.6e-106 390.2 301 65.4
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 2.7e-106 389.4 316 64.9
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 6.0e-106 388.3 315 63.5
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 7.8e-106 387.9 356 58.1
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 1.3e-105 387.1 326 63.5
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 2.3e-105 386.3 312 64.1
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 3.9e-105 385.6 313 63.3
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 5.0e-105 385.2 313 63.9
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 6.6e-105 384.8 317 62.8
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 6.6e-105 384.8 330 61.5
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.1e-104 384.0 393 56.2
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.1e-104 384.0 353 57.5
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 1.9e-104 383.3 389 54.5
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 2.5e-104 382.9 355 57.2
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 3.3e-104 382.5 364 56.6
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 5.6e-104 381.7 376 54.8
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 7.3e-104 381.3 356 56.5
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 7.3e-104 381.3 389 54.5
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.6e-103 380.2 312 62.2
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 2.8e-103 379.4 315 61.9
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 2.8e-103 379.4 315 61.9
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 2.8e-103 379.4 322 61.5
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 3.6e-103 379.0 317 61.8
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 4.7e-103 378.6 389 53.7
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 4.7e-103 378.6 318 62.3
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 6.2e-103 378.3 355 56.3
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 6.2e-103 378.3 315 61.6
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 6.2e-103 378.3 311 61.1
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 1.1e-102 377.5 315 61.6
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 1.4e-102 377.1 315 60.3
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.3e-102 376.3 310 62.3
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 3.1e-102 375.9 407 51.4
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 5.2e-102 375.2 312 61.5
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 5.2e-102 375.2 315 60.3
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 6.8e-102 374.8 315 61.0
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 6.8e-102 374.8 318 61.3
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 8.9e-102 374.4 349 57.0
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 8.9e-102 374.4 318 61.0
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 1.2e-101 374.0 315 61.3
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 1.5e-101 373.6 389 53.0
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 2.6e-101 372.9 349 56.7
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 3.4e-101 372.5 315 61.0
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 7.5e-101 371.3 315 60.3
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 7.5e-101 371.3 313 60.7
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 9.8e-101 370.9 313 61.0
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.3e-100 370.5 410 50.5
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.3e-100 370.5 318 61.0
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 1.3e-100 370.5 315 61.6
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 2.9e-100 369.4 313 60.7
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 2.9e-100 369.4 313 60.7
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 3.7e-100 369.0 313 59.4
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 6.4e-100 368.2 313 59.4
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 6.4e-100 368.2 310 60.6
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 2.4e-99 366.3 368 54.6
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 2.4e-99 366.3 318 60.1
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 5.4e-99 365.2 329 59.0
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 2.0e-98 363.2 313 58.8
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 3.0e-97 359.4 317 56.8
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 6.6e-97 358.2 304 60.2
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 1.5e-96 357.1 318 58.5
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.1e-94 350.9 315 59.7
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 7.5e-93 344.7 362 54.7
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 1.2e-90 337.4 273 64.1
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 3.5e-90 335.9 309 56.3
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 2.3e-89 333.2 315 57.1
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 1.5e-88 330.5 297 56.2
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 9.5e-88 327.8 310 56.8
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 9.9e-85 317.8 326 53.4
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.1e-83 314.3 342 52.0
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 1.7e-81 307.0 200 75.0
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 3.9e-81 305.8 297 52.2
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.9e-80 303.5 304 56.2
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 3.3e-80 302.8 304 55.9
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.6e-80 302.0 243 62.6
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.8e-79 299.7 254 60.6
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 6.2e-79 298.5 220 67.7
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.6e-72 275.4 344 51.5
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 2.8e-71 273.1 301 50.8
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 9.9e-69 264.6 232 61.2
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 1.1e-67 261.2 219 63.5
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 4.2e-67 259.2 231 57.6
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 4.2e-67 259.2 403 40.9
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 2.7e-66 256.5 291 46.7
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 3.0e-65 253.1 158 77.2
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 2.5e-64 250.0 343 40.8
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.1e-56 224.6 316 41.8
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 1.4e-43 181.0 175 57.1
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 1.8e-41 174.1 154 61.0
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 5.1e-41 172.6 120 68.3
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 2.4e-38 163.7 214 45.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.9e-35 154.1 247 40.1
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 3.7e-31 139.8 94 72.3
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 5.2e-25 119.4 205 39.0
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 7.0e-22 109.0 227 34.4
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.7e-20 104.4 71 70.4
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 5.0e-20 102.8 118 49.2
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 8.0e-18 95.5 164 43.3
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 5.2e-17 92.8 80 57.5
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 5.2e-17 92.8 114 45.6
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 3.3e-16 90.1 84 53.6
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 9.4e-11 72.0 44 77.3
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 1.4e-09 68.2 60 60.0


User provided reference genes

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