Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 7.0e-93 344.0 178 100.0
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.4e-88 329.7 178 96.6
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.4e-80 303.1 178 84.8
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 3.2e-77 292.0 178 83.1
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 8.9e-72 273.9 176 79.0
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 2.0e-71 272.7 178 76.4
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 5.8e-71 271.2 178 74.7
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 7.6e-63 244.2 154 81.2
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 1.9e-61 239.6 173 69.4
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.9e-61 239.6 178 69.1
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 7.1e-61 237.7 184 68.5
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 9.3e-61 237.3 178 68.0
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 2.1e-60 236.1 176 68.8
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.7e-60 235.7 178 68.5
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 7.8e-60 234.2 178 68.5
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 1.3e-59 233.4 178 66.3
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.3e-59 233.4 173 68.2
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 3.0e-59 232.3 171 67.3
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 5.1e-59 231.5 173 67.6
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 8.7e-59 230.7 171 67.3
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 8.7e-59 230.7 173 67.6
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 1.1e-58 230.3 178 66.9
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.5e-58 229.2 175 65.7
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 5.6e-58 228.0 168 70.2
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.6e-57 226.5 175 65.1
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 8.1e-57 224.2 175 64.0
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.2e-55 220.3 165 67.3
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.2e-55 220.3 165 67.3
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.7e-54 216.5 168 67.3
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.9e-54 215.7 178 62.4
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 1.9e-53 213.0 177 63.3
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.4e-53 212.6 168 66.1
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.4e-53 211.5 168 65.5
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 7.1e-53 211.1 168 63.7
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 9.3e-53 210.7 169 65.1
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 9.3e-53 210.7 201 56.7
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 4.6e-52 208.4 172 61.0
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 4.6e-52 208.4 175 61.1
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.3e-51 206.8 168 62.5
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.0e-51 205.7 166 60.8
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 6.7e-51 204.5 173 60.1
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 2.5e-50 202.6 172 61.6
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.5e-50 202.6 157 66.2
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 7.4e-50 201.1 154 66.9
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.6e-49 199.9 178 66.9
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 4.8e-49 198.4 172 58.1
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 6.2e-49 198.0 171 59.1
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 8.1e-49 197.6 175 60.6
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.4e-48 196.8 172 58.7
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 1.4e-48 196.8 172 59.3
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 1.8e-48 196.4 154 66.2
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 1.8e-48 196.4 154 66.2
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 9.0e-48 194.1 172 58.7
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 1.2e-47 193.7 178 56.7
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.0e-47 193.0 163 60.7
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 7.6e-47 191.0 171 55.6
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 9.9e-47 190.7 169 58.0
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 1.3e-46 190.3 162 59.9
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 1.3e-46 190.3 162 59.9
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.3e-46 190.3 172 58.1
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 1.3e-46 190.3 168 58.9
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 3.8e-46 188.7 168 59.5
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 3.8e-46 188.7 178 55.1
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 3.8e-46 188.7 160 59.4
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 6.4e-46 188.0 176 57.4
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 8.4e-46 187.6 174 55.2
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 8.4e-46 187.6 166 57.8
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 2.4e-45 186.0 176 55.1
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 2.4e-45 186.0 176 55.1
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 4.2e-45 185.3 172 57.0
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 7.1e-45 184.5 175 55.4
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 7.1e-45 184.5 176 56.2
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 9.3e-45 184.1 225 47.6
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 9.3e-45 184.1 153 62.7
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 9.3e-45 184.1 155 61.3
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.7e-44 182.6 222 48.2
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.3e-43 180.3 174 56.3
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 3.9e-43 178.7 163 58.3
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 3.9e-43 178.7 178 53.9
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 6.7e-43 177.9 230 46.5
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 8.7e-43 177.6 171 54.4
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 1.9e-42 176.4 187 51.9
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 2.5e-42 176.0 152 61.2
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.3e-42 175.3 134 65.7
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 4.3e-42 175.3 175 55.4
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 1.3e-41 173.7 172 56.4
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 1.6e-41 173.3 133 67.7
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 6.2e-41 171.4 153 58.8
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 6.2e-41 171.4 173 55.5
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 1.1e-40 170.6 173 50.9
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 1.1e-40 170.6 163 57.1
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 1.8e-40 169.9 175 54.3
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.8e-40 169.9 115 74.8
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 2.4e-40 169.5 156 57.1
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 5.3e-40 168.3 174 51.1
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 9.0e-40 167.5 179 50.8
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 2.0e-39 166.4 162 56.8
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 2.6e-39 166.0 179 50.3
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.4e-39 165.6 161 54.0
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 1.0e-38 164.1 154 54.5
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 1.3e-38 163.7 173 53.2
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.7e-38 163.3 158 56.3
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 3.8e-38 162.2 128 62.5
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 8.4e-38 161.0 169 53.3
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 1.1e-37 160.6 132 65.2
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.9e-37 159.8 174 49.4
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 2.5e-37 159.5 175 49.7
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 5.5e-37 158.3 164 50.0
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 2.1e-36 156.4 271 39.1
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 4.6e-36 155.2 172 50.0
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 6.0e-36 154.8 152 54.6
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 1.3e-35 153.7 171 50.3
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 1.8e-35 153.3 164 47.6
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 6.7e-35 151.4 176 46.0
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 6.7e-35 151.4 176 46.0
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 6.7e-35 151.4 151 54.3
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 8.7e-35 151.0 129 58.9
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 2.5e-34 149.4 140 57.1
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 5.7e-34 148.3 136 59.6
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 1.6e-33 146.7 172 47.1
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 2.2e-33 146.4 134 59.0
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 6.3e-33 144.8 160 51.9
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 2.4e-32 142.9 164 45.1
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 4.1e-32 142.1 154 51.9
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 7.6e-31 137.9 178 45.5
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.3e-30 137.1 86 70.9
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.7e-30 136.7 173 43.9
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.9e-29 133.3 178 47.8
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 2.5e-29 132.9 175 43.4
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 3.2e-29 132.5 108 68.5
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 1.2e-28 130.6 165 47.9
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.6e-28 129.0 160 47.5
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 7.9e-28 127.9 141 52.5
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.3e-27 126.3 84 66.7
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 2.8e-25 119.4 143 55.2
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 4.8e-25 118.6 91 63.7
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 6.1e-20 101.7 83 65.1
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 5.7e-18 95.1 84 61.9
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 5.7e-18 95.1 91 59.3
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.8e-17 92.8 81 63.0
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 6.3e-17 91.7 110 54.5
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.1e-16 90.9 81 63.0
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.8e-16 90.1 88 60.2
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.4e-16 89.7 81 60.5
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.3e-14 84.0 163 35.0
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 2.9e-14 82.8 165 32.1
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 3.6e-12 75.9 127 38.6
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 3.0e-11 72.8 61 62.3
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.4e-08 63.2 76 52.6
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 5.3e-08 62.0 145 28.3
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 4.5e-07 58.9 68 51.5
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 1.0e-06 57.8 67 52.2


User provided reference genes

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