Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 8.7e-77 290.4 168 100.0
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.8e-67 258.8 168 91.7
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.8e-59 232.3 164 86.6
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.1e-50 203.8 144 88.9
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 6.7e-45 184.5 154 75.3
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.6e-44 182.6 163 72.4
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.2e-41 173.7 145 77.9
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 4.5e-41 171.8 148 75.7
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 5.0e-40 168.3 146 76.0
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 8.5e-40 167.5 147 74.8
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 3.2e-39 165.6 148 73.0
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.1e-38 162.9 152 71.1
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.7e-38 162.5 152 70.4
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 6.1e-38 161.4 152 68.4
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 8.0e-38 161.0 152 69.7
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 8.0e-38 161.0 152 71.1
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.7e-35 153.3 152 69.1
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.1e-34 150.6 111 87.4
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 5.3e-34 148.3 149 67.8
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.6e-33 146.7 117 78.6
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.7e-33 146.0 165 63.6
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 5.9e-33 144.8 122 77.0
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.0e-32 144.1 147 68.7
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.2e-32 142.9 120 78.3
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.2e-32 142.9 137 71.5
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.9e-32 142.5 165 63.0
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 2.9e-32 142.5 178 59.6
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 6.5e-32 141.4 137 70.8
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 1.9e-31 139.8 120 79.2
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.1e-30 136.3 180 58.3
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 2.1e-30 136.3 142 69.7
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 3.0e-29 132.5 121 76.0
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 5.2e-29 131.7 139 70.5
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 5.2e-29 131.7 145 63.4
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.2e-28 130.6 126 73.8
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.5e-28 130.2 165 60.0
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 2.6e-28 129.4 109 83.5
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 4.4e-28 128.6 122 73.8
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 4.4e-28 128.6 152 58.6
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 7.5e-28 127.9 151 57.6
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 1.7e-27 126.7 145 63.4
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 7.0e-26 121.3 118 70.3
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 9.1e-26 120.9 122 70.5
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 1.6e-25 120.2 148 61.5
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 2.0e-25 119.8 141 65.2
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 2.0e-25 119.8 102 81.4
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.0e-25 119.8 100 82.0
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 3.5e-25 119.0 163 60.1
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 4.5e-25 118.6 115 72.2
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 4.5e-25 118.6 136 64.7
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 4.5e-25 118.6 138 66.7
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 4.5e-25 118.6 145 61.4
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 5.9e-25 118.2 121 61.2
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 7.7e-25 117.9 164 59.1
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.0e-24 117.5 138 67.4
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 1.0e-24 117.5 154 62.3
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 1.0e-24 117.5 111 73.9
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.2e-24 116.3 102 80.4
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.2e-24 116.3 102 80.4
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.2e-24 116.3 102 80.4
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 2.9e-24 115.9 159 61.0
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 3.8e-24 115.5 144 60.4
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 5.0e-24 115.2 129 62.0
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 6.5e-24 114.8 129 60.5
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 8.5e-24 114.4 156 56.4
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 8.5e-24 114.4 128 62.5
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.1e-23 114.0 150 57.3
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.5e-23 113.6 162 54.3
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 7.2e-23 111.3 100 81.0
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.1e-22 109.8 167 55.7
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.6e-22 109.0 134 56.7
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.6e-22 109.0 156 55.1
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.7e-22 108.6 134 56.7
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 8.0e-22 107.8 102 76.5
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 8.0e-22 107.8 108 75.0
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.4e-21 107.1 122 60.7
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 1.8e-21 106.7 148 53.4
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 3.0e-21 105.9 110 74.5
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 3.0e-21 105.9 134 56.0
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 6.8e-21 104.8 134 56.0
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 8.8e-21 104.4 106 71.7
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 8.8e-21 104.4 88 80.7
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.5e-20 103.6 99 76.8
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.6e-20 102.8 122 63.1
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 3.4e-20 102.4 102 73.5
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 3.4e-20 102.4 102 73.5
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 3.4e-20 102.4 102 73.5
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 4.4e-20 102.1 109 73.4
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 4.4e-20 102.1 109 73.4
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 4.4e-20 102.1 104 76.9
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 9.8e-20 100.9 109 63.3
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 2.8e-19 99.4 126 57.9
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 4.9e-19 98.6 164 56.1
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 6.3e-19 98.2 100 75.0
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 8.3e-19 97.8 122 57.4
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.1e-18 97.4 99 75.8
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.1e-18 97.4 104 72.1
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 1.1e-18 97.4 57 84.2
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 1.4e-18 97.1 163 47.9
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.8e-18 96.7 98 74.5
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.8e-18 96.7 122 59.8
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 2.4e-18 96.3 129 61.2
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 2.4e-18 96.3 142 54.2
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 3.1e-18 95.9 100 74.0
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 3.1e-18 95.9 100 74.0
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 1.6e-17 93.6 100 73.0
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 2.7e-17 92.8 115 68.7
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 5.9e-17 91.7 98 72.4
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.3e-16 90.5 160 49.4
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 3.8e-16 89.0 177 47.5
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.5e-15 87.0 134 49.3
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 7.3e-15 84.7 102 56.9
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 7.3e-15 84.7 121 55.4
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 9.5e-15 84.3 86 67.4
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 9.5e-15 84.3 86 67.4
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 1.2e-14 84.0 86 67.4
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 1.2e-14 84.0 92 64.1
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 1.2e-14 84.0 86 67.4
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.2e-14 84.0 99 63.6
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 2.8e-14 82.8 122 54.9
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.8e-14 82.8 115 61.7
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 3.6e-14 82.4 103 57.3
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 3.6e-14 82.4 87 64.4
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 3.6e-14 82.4 103 57.3
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 3.6e-14 82.4 87 64.4
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.6e-14 82.4 147 51.0
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 8.0e-14 81.3 130 54.6
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 8.0e-14 81.3 88 70.5
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 4.0e-13 79.0 86 70.9
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 4.0e-13 79.0 91 65.9
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 5.2e-13 78.6 121 57.0
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 5.2e-13 78.6 132 56.8
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 1.2e-12 77.4 95 61.1
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.6e-12 76.3 154 44.8
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 4.4e-12 75.5 130 50.8
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.3e-11 73.9 123 55.3
Nitab4.5_0010352g0020 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.2e-11 73.2 164 45.1
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.7e-11 72.4 68 72.1
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 6.4e-11 71.6 98 56.1
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 8.3e-11 71.2 68 72.1
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.4e-10 70.5 68 73.5
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 9.2e-10 67.8 156 43.6
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.2e-09 67.4 155 43.2
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.7e-09 66.2 85 50.6
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 7.8e-09 64.7 68 61.8
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.0e-08 64.3 68 67.6
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 1.3e-08 63.9 153 39.9
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 3.9e-08 62.4 153 39.2
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 8.6e-08 61.2 113 42.5
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 1.1e-07 60.8 110 56.4
Sabra11G0141000 Salix brachista HOM05D002312 ORTHO05D006455 1.1e-07 60.8 87 43.7
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 2.5e-07 59.7 100 54.0
Ca_04555_v3 Cicer arietinum L. HOM05D011393 ORTHO05D013493 7.3e-07 58.2 158 40.5
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 1.2e-06 57.4 102 48.0
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 2.8e-06 56.2 123 48.0
TPR.G38738 Trifolium pratense HOM05D011393 ORTHO05D013493 4.7e-06 55.5 112 44.6
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 8.0e-06 54.7 101 50.5


User provided reference genes

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