Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 0.0e+00 1642.1 957 100.0
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 0.0e+00 1184.5 963 72.4
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 0.0e+00 1105.5 927 68.0
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 0.0e+00 1102.4 855 73.3
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 0.0e+00 1095.9 931 67.5
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 0.0e+00 1094.7 968 66.4
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 0.0e+00 1094.7 927 67.7
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 0.0e+00 1077.0 935 67.4
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 5.9e-311 1070.8 932 66.8
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 9.8e-311 1070.1 931 66.8
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 9.3e-309 1063.5 962 65.2
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 1.5e-306 1056.2 959 66.4
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 1.6e-300 1036.2 889 71.4
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 6.7e-299 1030.8 935 65.3
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 1.3e-297 1026.5 933 66.1
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 1.1e-296 1023.5 938 65.2
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 1.5e-295 1019.6 964 64.4
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 1.4e-293 1013.1 990 62.1
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 3.2e-293 1011.9 927 63.3
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 3.6e-292 1008.4 1056 58.7
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 7.9e-292 1007.3 936 63.9
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 1.4e-291 1006.5 957 64.1
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.1e-290 1003.4 946 64.3
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 3.7e-289 998.4 935 63.1
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 1.5e-287 993.0 937 65.2
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.6e-287 992.3 946 64.4
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 3.8e-286 988.4 949 63.3
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 6.5e-286 987.6 950 64.9
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 3.2e-285 985.3 943 62.2
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 1.8e-283 979.5 935 62.8
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 8.8e-283 977.2 939 60.9
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 1.1e-282 976.9 984 62.3
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 2.8e-281 972.2 939 63.5
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 2.0e-279 966.1 937 63.4
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 4.5e-279 964.9 971 60.4
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 5.9e-279 964.5 937 63.5
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 7.7e-279 964.1 844 66.4
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 2.9e-278 962.2 937 63.6
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 8.5e-278 960.7 937 63.4
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 2.4e-272 942.6 943 60.4
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 2.4e-272 942.6 984 59.3
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 2.7e-271 939.1 971 61.4
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 3.8e-270 935.3 941 60.5
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 1.1e-269 933.7 938 60.3
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 1.5e-269 933.3 921 60.9
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 1.2e-268 930.2 979 59.7
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 1.2e-266 923.7 1004 61.1
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 3.4e-266 922.2 945 60.3
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 9.1e-264 914.1 976 57.3
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 5.6e-261 904.8 981 57.5
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 7.2e-261 904.4 932 59.3
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 8.9e-259 897.5 973 57.5
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 1.2e-258 897.1 963 57.7
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 2.9e-257 892.5 930 57.6
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 4.9e-257 891.7 934 59.3
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 4.9e-257 891.7 968 58.2
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.1e-256 890.6 931 57.5
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 1.1e-256 890.6 942 57.5
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 9.2e-256 887.5 944 58.2
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 1.2e-255 887.1 948 59.7
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 2.0e-255 886.3 930 57.8
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 7.8e-255 884.4 942 59.0
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 5.0e-254 881.7 936 59.2
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 9.5e-253 877.5 968 56.7
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 8.0e-252 874.4 963 57.2
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 2.3e-251 872.8 941 57.1
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.1e-251 872.5 981 55.9
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 8.9e-251 870.9 977 55.4
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 5.8e-250 868.2 933 59.2
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 9.8e-250 867.5 942 58.7
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.4e-248 862.8 964 56.8
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 7.0e-248 861.3 939 55.1
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.7e-247 859.4 976 53.5
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 7.8e-247 857.8 925 54.4
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 3.9e-246 855.5 934 56.3
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 5.0e-246 855.1 995 55.5
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 2.8e-244 849.4 928 57.3
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 5.2e-243 845.1 999 53.3
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 1.5e-242 843.6 935 54.9
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 3.4e-242 842.4 938 56.4
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 7.5e-242 841.3 977 54.9
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 1.0e-238 830.9 937 55.3
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 1.0e-238 830.9 932 54.9
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 1.3e-238 830.5 939 56.3
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 3.3e-237 825.9 935 55.7
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.1e-235 819.3 879 57.6
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 9.9e-234 814.3 937 55.2
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 1.1e-232 810.8 940 54.9
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 1.3e-230 803.9 930 54.5
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 1.6e-228 797.0 956 52.6
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.4e-226 788.9 960 53.3
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 2.5e-221 773.1 940 52.4
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.2e-202 711.1 817 54.6
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 1.1e-195 688.0 933 49.9
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 7.7e-186 655.2 953 46.5
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 3.4e-178 629.8 944 46.3
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 5.5e-176 622.5 700 57.4
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 2.0e-170 604.0 933 45.2
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 8.5e-169 598.6 444 68.7
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 9.1e-155 552.0 395 71.9
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 7.7e-154 548.9 621 60.9
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 8.9e-142 508.8 515 64.7
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.9e-137 493.4 580 54.0
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 1.8e-134 484.6 585 55.2
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 2.2e-124 451.1 908 41.9
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.6e-103 380.6 496 53.8
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.2e-99 367.5 265 74.0
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 6.7e-97 359.8 583 44.9
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.3e-89 335.5 327 63.9
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 3.0e-81 307.8 304 61.8
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 2.2e-76 291.6 313 58.1
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.6e-74 283.9 192 75.0
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 5.7e-72 276.9 262 57.6
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 8.5e-68 263.1 267 53.6
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.9e-65 254.2 325 55.7
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 5.7e-64 250.4 410 49.3
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 9.1e-62 243.0 968 29.4
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 5.3e-54 217.2 275 51.6
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 7.2e-51 206.8 1133 28.3
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 1.4e-46 192.6 322 43.5
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 8.9e-33 146.7 328 44.8
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 3.7e-31 141.4 99 69.7
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.6e-29 136.0 83 85.5
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 1.0e-28 133.3 692 27.7
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 2.3e-28 132.1 114 61.4
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.9e-28 131.7 108 71.3
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.9e-28 131.7 114 66.7
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.9e-27 129.0 123 56.9
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.5e-27 128.6 126 55.6
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 3.3e-27 128.3 111 61.3
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 3.3e-27 128.3 263 39.2
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 8.9e-25 120.2 354 36.7
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 1.2e-24 119.8 779 25.7
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.4e-22 112.8 116 56.9
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 9.2e-22 110.2 92 64.1
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 7.8e-21 107.1 92 63.0
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 1.0e-20 106.7 208 36.1
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 1.4e-17 96.3 142 45.1
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 2.3e-17 95.5 72 73.6
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.0e-16 92.4 69 78.3
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 9.8e-16 90.1 55 89.1
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.7e-15 88.2 94 55.3
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.1e-14 86.7 52 84.6
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.4e-14 84.3 52 84.6
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 1.1e-11 76.6 58 67.2
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.8e-10 72.0 54 72.2
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 5.8e-08 64.3 52 61.5
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 9.9e-08 63.5 89 47.2
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.9e-07 62.0 48 72.9
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.1e-06 58.2 83 48.2


User provided reference genes

Program Settings