Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013015 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 5.3e-78 294.3 147 100.0
Dinv21241 Davidia involucrata HOM05D000375 ORTHO05D000240 4.7e-42 174.9 150 66.0
CiPaw.09G009800 Carya illinoinensis HOM05D000375 ORTHO05D000240 6.1e-42 174.5 146 65.1
Duzib128G0614 Durio zibethinus HOM05D000375 ORTHO05D000240 2.3e-41 172.6 149 64.4
Manes.09G058720 Manihot esculenta HOM05D000375 ORTHO05D000240 1.1e-40 170.2 149 64.4
CSS0041727 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 2.0e-40 169.5 154 68.2
Actinidia34353 Actinidia chinensis HOM05D000375 ORTHO05D000240 4.4e-40 168.3 151 64.2
QL07p040017 Quercus lobata HOM05D000375 ORTHO05D000240 2.2e-39 166.0 147 63.9
Actinidia10395 Actinidia chinensis HOM05D000375 ORTHO05D000240 3.7e-39 165.2 150 62.7
Cfa016559 Carpinus fangiana HOM05D000375 ORTHO05D000240 1.4e-38 163.3 146 65.1
GSVIVG01033800001 Vitis vinifera HOM05D000375 ORTHO05D000240 1.4e-38 163.3 148 63.5
Haze_19561 Corylus avellana HOM05D000375 ORTHO05D000240 1.8e-38 162.9 148 64.9
Actinidia31283 Actinidia chinensis HOM05D000375 ORTHO05D000240 7.0e-38 161.0 140 65.7
Gohir.A09G137600 Gossypium hirsutum HOM05D000375 ORTHO05D000240 9.1e-38 160.6 152 63.8
Manes.08G022300 Manihot esculenta HOM05D000375 ORTHO05D000240 2.0e-37 159.5 146 63.0
vmacro08825 Vaccinium macrocarpon HOM05D000375 ORTHO05D000240 5.9e-37 157.9 145 63.4
Oeu039815.1 Olea europaea HOM05D000375 ORTHO05D000240 7.7e-37 157.5 146 64.4
Gohir.D09G137000 Gossypium hirsutum HOM05D000375 ORTHO05D000240 6.5e-36 154.5 152 63.8
CiPaw.10G006500 Carya illinoinensis HOM05D000375 ORTHO05D000240 5.5e-35 151.4 146 58.9
Gorai.006G157300 Gossypium raimondii HOM05D000375 ORTHO05D000240 5.5e-35 151.4 152 61.8
Nn2g14050 Nelumbo nucifera HOM05D000375 ORTHO05D000240 1.2e-34 150.2 147 56.5
Prupe.7G115500 Prunus persica HOM05D000375 ORTHO05D000240 2.1e-34 149.4 152 59.2
Eucgr.A01534 Eucalyptus grandis HOM05D000375 ORTHO05D000240 2.7e-34 149.1 154 59.1
Nn6g35011 Nelumbo nucifera HOM05D000375 ORTHO05D000240 6.1e-34 147.9 122 66.4
Oeu040806.1 Olea europaea HOM05D000375 ORTHO05D000240 8.0e-34 147.5 134 64.2
Atru.chr8.1613 Acer truncatum HOM05D000375 ORTHO05D000240 1.4e-33 146.7 152 58.6
Cc06_g05390 Coffea canephora HOM05D000375 ORTHO05D000240 1.4e-33 146.7 150 58.0
Ciclev10011856m.g Citrus clementina HOM05D000375 ORTHO05D000240 1.8e-33 146.4 145 62.1
Rhsim04G0134400 Rhododendron simsii HOM05D000375 ORTHO05D000240 1.8e-33 146.4 148 60.8
Thecc.05G083300 Theobroma cacao HOM05D000375 ORTHO05D000240 2.3e-33 146.0 149 59.7
Cpa.g.sc5.63 Carica papaya HOM05D000375 ORTHO05D000240 6.7e-33 144.4 147 59.9
VMungo1383G3570 Vigna mungo HOM05D000375 ORTHO05D000240 6.7e-33 144.4 154 55.8
Lj1g0022211 Lotus japonicus HOM05D000375 ORTHO05D000240 1.2e-32 143.7 154 55.2
Ca_08973_v3 Cicer arietinum L. HOM05D000375 ORTHO05D000240 1.5e-32 143.3 156 55.8
TWI53G1523 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 7.5e-32 141.0 152 59.9
Aqoxy2G01355 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 2.8e-31 139.0 150 54.7
PSO443G0062 Papaver somniferum HOM05D000375 ORTHO05D000240 2.8e-31 139.0 153 56.9
MSTRG.10355 Avicennia marina HOM05D000375 ORTHO05D000240 4.8e-31 138.3 128 58.6
Lalb_Chr25g0288591 Lupinus albus HOM05D000375 ORTHO05D000240 8.2e-31 137.5 134 56.7
MSTRG.19238 Avicennia marina HOM05D000375 ORTHO05D000240 1.4e-30 136.7 136 58.8
Peaxi162Scf00068g00018 Petunia axillaris HOM05D000375 ORTHO05D000240 1.4e-30 136.7 150 56.7
Hma1.2p1_0084F.1_g043380 Hydrangea macrophylla HOM05D000375 ORTHO05D000240 2.4e-30 136.0 150 54.0
Peaxi162Scf00163g00419 Petunia axillaris HOM05D000375 ORTHO05D000240 2.4e-30 136.0 151 54.3
TAR633G1342 Trochodendron aralioides HOM05D000375 ORTHO05D000240 5.3e-30 134.8 147 53.7
AUR62043106 Chenopodium quinoa HOM05D000375 ORTHO05D000240 7.0e-30 134.4 152 58.6
Sed0026104 Sechium edule HOM05D000375 ORTHO05D000240 7.0e-30 134.4 150 49.3
PGR004G0222 Punica granatum HOM05D000375 ORTHO05D000240 1.6e-29 133.3 150 54.7
PSO384G2858 Papaver somniferum HOM05D000375 ORTHO05D000240 2.7e-29 132.5 150 56.0
Sopen09g003930 Solanum pennellii HOM05D000375 ORTHO05D000240 3.5e-29 132.1 144 56.2
CAN.G1039.19 Capsicum annuum HOM05D000375 ORTHO05D000240 4.5e-29 131.7 136 58.8
Glyma.19G192700 Glycine max HOM05D000375 ORTHO05D000240 4.5e-29 131.7 149 53.7
TAR636G1689 Trochodendron aralioides HOM05D000375 ORTHO05D000240 7.7e-29 131.0 131 58.0
Medtr7g104050 Medicago truncatula HOM05D000375 ORTHO05D000240 1.3e-28 130.2 160 52.5
Phvul.001G187500 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 1.7e-28 129.8 154 52.6
Solyc09g009200.3 Solanum lycopersicum HOM05D000375 ORTHO05D000240 1.7e-28 129.8 145 57.2
ClCG10G019220 Citrullus lanatus HOM05D000375 ORTHO05D000240 2.2e-28 129.4 163 49.7
Glyma.03G192200 Glycine max HOM05D000375 ORTHO05D000240 3.8e-28 128.6 146 53.4
Nitab4.5_0004686g0010 Nicotiana tabacum HOM05D000375 ORTHO05D000240 3.8e-28 128.6 146 56.2
MD12G1020500 Malus domestica HOM05D000375 ORTHO05D000240 5.0e-28 128.3 152 52.6
RcHm_v2.0_Chr3g0472411 Rosa chinensis HOM05D000375 ORTHO05D000240 5.0e-28 128.3 154 54.5
PGSC0003DMG400002679 Solanum tuberosum HOM05D000375 ORTHO05D000240 5.0e-28 128.3 141 56.0
MD14G1017600 Malus domestica HOM05D000375 ORTHO05D000240 6.5e-28 127.9 152 51.3
Nitab4.5_0003541g0030 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.5e-27 126.7 151 52.3
Gorai.009G406500 Gossypium raimondii HOM05D000375 ORTHO05D000240 2.5e-27 125.9 126 57.9
EL10Ac7g16969 Beta vulgaris HOM05D000375 ORTHO05D000240 5.5e-27 124.8 157 55.4
AUR62033547 Chenopodium quinoa HOM05D000375 ORTHO05D000240 5.5e-27 124.8 153 55.6
Lsat_1_v5_gn_6_70601 Lactuca sativa HOM05D000375 ORTHO05D000240 2.1e-26 122.9 146 51.4
ECA233G0476 Erigeron canadensis HOM05D000375 ORTHO05D000240 3.6e-26 122.1 151 53.0
SalBow5G1012 Salvia bowleyana HOM05D000375 ORTHO05D000240 3.6e-26 122.1 135 54.1
Hund04037 Selenicereus undatus HOM05D000375 ORTHO05D000240 3.6e-26 122.1 151 53.0
Ah.08g210830 Amaranthus hybridus HOM05D000375 ORTHO05D000240 8.0e-26 120.9 149 53.0
FvH4_6g18130 Fragaria vesca HOM05D000375 ORTHO05D000240 1.4e-25 120.2 126 54.8
DCAR_013369 Daucus carota HOM05D000375 ORTHO05D000240 1.8e-25 119.8 137 55.5
FAN09G3221 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.3e-25 119.4 126 54.8
Nitab4.5_0000963g0060 Nicotiana tabacum HOM05D000375 ORTHO05D000240 3.0e-25 119.0 143 54.5
FAN05G1340 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.5e-24 116.7 128 54.7
FAN05G2461 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.5e-24 116.7 128 54.7
HanXRQChr03g0082241 Helianthus annuus HOM05D000375 ORTHO05D000240 2.0e-24 116.3 138 55.8
FAN02G1892 Fragaria x ananassa HOM05D000375 ORTHO05D000240 5.7e-24 114.8 126 54.0
MELO3C009444.2 Cucumis melo HOM05D000375 ORTHO05D000240 7.5e-24 114.4 162 43.8
arahy.Tifrunner.gnm1.ann1.KV1X6M Arachis hypogaea HOM05D000375 ORTHO05D000240 1.3e-23 113.6 138 51.4
Hund19978 Selenicereus undatus HOM05D000375 ORTHO05D000240 1.3e-23 113.6 144 54.2
Migut.L01765 Erythranthe guttata HOM05D000375 ORTHO05D000240 2.8e-23 112.5 138 51.4
Sopen10g032980 Solanum pennellii HOM05D000375 ORTHO05D000240 2.8e-23 112.5 136 55.9
FAN14G1098 Fragaria x ananassa HOM05D000375 ORTHO05D000240 6.3e-23 111.3 126 52.4
Solyc10g083510.2 Solanum lycopersicum HOM05D000375 ORTHO05D000240 6.3e-23 111.3 133 56.4
arahy.Tifrunner.gnm1.ann1.G4PR1G Arachis hypogaea HOM05D000375 ORTHO05D000240 8.3e-23 110.9 138 50.7
CAN.G824.18 Capsicum annuum HOM05D000375 ORTHO05D000240 1.4e-22 110.2 139 51.1
Sed0002035 Sechium edule HOM05D000375 ORTHO05D000240 1.8e-22 109.8 150 45.3
PGSC0003DMG400028259 Solanum tuberosum HOM05D000375 ORTHO05D000240 1.8e-22 109.8 134 55.2
Psat3g034600 Pisum sativum HOM05D000375 ORTHO05D000240 4.1e-22 108.6 164 47.0
DCAR_020773 Daucus carota HOM05D000375 ORTHO05D000240 5.4e-22 108.2 122 56.6
SHI23940 Sapria himalayana HOM05D000375 ORTHO05D000240 5.4e-22 108.2 144 47.9
TPR.G19535 Trifolium pratense HOM05D000375 ORTHO05D000240 9.1e-22 107.5 157 45.9
SGA_v2.0_scaffold13G06773 Striga asiatica HOM05D000375 ORTHO05D000240 2.7e-21 105.9 143 48.3
CANSAT51G0007 Cannabis sativa HOM05D000375 ORTHO05D000240 4.5e-21 105.1 172 43.6
CsaV3_3G036970 Cucumis sativus L. HOM05D000375 ORTHO05D000240 5.9e-21 104.8 164 42.7
Glyma.U031220 Glycine max HOM05D000375 ORTHO05D000240 5.9e-21 104.8 157 44.6
Glyma.10G067200 Glycine max HOM05D000375 ORTHO05D000240 2.9e-20 102.4 154 44.8
COL.COLO4_29796 Corchorus olitorius HOM05D000375 ORTHO05D000240 3.8e-20 102.1 87 66.7
SGA_v2.0_scaffold184G39943 Striga asiatica HOM05D000375 ORTHO05D000240 5.0e-20 101.7 159 47.2
Aqoxy4G02853 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 4.2e-19 98.6 129 48.8
PSO384G2151 Papaver somniferum HOM05D000375 ORTHO05D000240 4.2e-19 98.6 151 47.7
PSO339G4506 Papaver somniferum HOM05D000375 ORTHO05D000240 7.2e-19 97.8 151 47.0
Sabra06G0090100 Salix brachista HOM05D000375 ORTHO05D000240 1.6e-18 96.7 143 49.7
Oeu032415.1 Olea europaea HOM05D000375 ORTHO05D000240 2.1e-18 96.3 117 52.1
SalBow3G1415 Salvia bowleyana HOM05D000375 ORTHO05D000240 3.6e-18 95.5 146 47.9
A04p27910 Brassica napus HOM05D000375 ORTHO05D000240 4.7e-18 95.1 136 46.3
BraA04t18282Z Brassica rapa HOM05D000375 ORTHO05D000240 4.7e-18 95.1 136 46.3
CDE02G4227 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 6.1e-18 94.7 145 49.0
BcaC02g07600 Brassica carinata HOM05D000375 ORTHO05D000240 8.0e-18 94.4 136 45.6
BolC4t28021H Brassica oleracea HOM05D000375 ORTHO05D000240 8.0e-18 94.4 136 45.6
MSTRG.26647 Avicennia marina HOM05D000375 ORTHO05D000240 1.0e-17 94.0 127 48.8
C03p23540 Brassica napus HOM05D000375 ORTHO05D000240 1.0e-17 94.0 132 47.7
Carub.0004s1820 Capsella rubella HOM05D000375 ORTHO05D000240 1.4e-17 93.6 141 46.1
Actinidia25635 Actinidia chinensis HOM05D000375 ORTHO05D000240 1.8e-17 93.2 92 60.9
BcaC01g05661 Brassica carinata HOM05D000375 ORTHO05D000240 1.8e-17 93.2 119 50.4
A03p20110 Brassica napus HOM05D000375 ORTHO05D000240 1.8e-17 93.2 119 50.4
BraA03t11261Z Brassica rapa HOM05D000375 ORTHO05D000240 1.8e-17 93.2 119 50.4
BcaB06g28936 Brassica carinata HOM05D000375 ORTHO05D000240 5.2e-17 91.7 137 46.0
CARHR130700 Cardamine hirsuta HOM05D000375 ORTHO05D000240 5.2e-17 91.7 142 45.1
DCAR_009139 Daucus carota HOM05D000375 ORTHO05D000240 1.2e-16 90.5 134 50.7
Sp4g18690 Schrenkiella parvula HOM05D000375 ORTHO05D000240 1.5e-16 90.1 137 46.7
BolC3t14750H Brassica oleracea HOM05D000375 ORTHO05D000240 4.4e-16 88.6 119 49.6
VMungo0720G3052 Vigna mungo HOM05D000375 ORTHO05D000240 5.7e-16 88.2 154 40.9
THA.LOC104823461 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 1.7e-15 86.7 115 50.4
Phvul.007G222300 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 3.7e-15 85.5 150 41.3
Sc20g0006130 Simmondsia chinensis HOM05D000375 ORTHO05D000240 1.4e-14 83.6 157 40.8
AT2G36400 Arabidopsis thaliana HOM05D000375 ORTHO05D000240 1.8e-14 83.2 141 43.3
Nitab4.5_0000132g0060 Nicotiana tabacum HOM05D000375 ORTHO05D000240 5.4e-14 81.6 121 49.6
Potri.006G115200 Populus trichocarpa HOM05D000375 ORTHO05D000240 5.4e-14 81.6 132 47.7
Thhalv10016778m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 9.2e-14 80.9 136 44.9
BcaB01g03841 Brassica carinata HOM05D000375 ORTHO05D000240 1.6e-13 80.1 118 47.5
BcaC02g11756 Brassica carinata HOM05D000375 ORTHO05D000240 1.6e-13 80.1 140 43.6
C04p11680 Brassica napus HOM05D000375 ORTHO05D000240 1.6e-13 80.1 140 43.6
BolC4t22817H Brassica oleracea HOM05D000375 ORTHO05D000240 1.6e-13 80.1 140 43.6
unitig_749.g14291 Utricularia gibba HOM05D000375 ORTHO05D000240 2.0e-13 79.7 123 48.8
unitig_8.g4145 Utricularia gibba HOM05D000375 ORTHO05D000240 2.0e-13 79.7 125 47.2
HPP92_011894 Vanilla planifolia HOM05D000375 ORTHO05D000240 2.0e-13 79.7 130 50.0
Aa31LG10G8090 Aethionema arabicum HOM05D000375 ORTHO05D000240 3.5e-13 79.0 117 44.4
AL4G32560 Arabidopsis lyrata HOM05D000375 ORTHO05D000240 4.5e-13 78.6 141 42.6
ATR0820G058 Amborella trichopoda HOM05D000375 ORTHO05D000240 5.9e-13 78.2 118 47.5
CDE08G0533 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 1.0e-12 77.4 128 47.7
Thhalv10022062m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 1.3e-12 77.0 136 42.6
Sp5g09420 Schrenkiella parvula HOM05D000375 ORTHO05D000240 1.7e-12 76.6 137 44.5
BcaB02g09355 Brassica carinata HOM05D000375 ORTHO05D000240 9.5e-11 70.9 141 42.6
BolC8t50429H Brassica oleracea HOM05D000375 ORTHO05D000240 9.5e-11 70.9 129 42.6
BcaC08g44606 Brassica carinata HOM05D000375 ORTHO05D000240 1.2e-10 70.5 125 44.0
Thhalv10010453m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 1.6e-10 70.1 142 43.0
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 3.6e-10 68.9 135 43.0
BolC6t37262H Brassica oleracea HOM05D000375 ORTHO05D000240 3.6e-10 68.9 135 43.0
AL5G33700 Arabidopsis lyrata HOM05D000375 ORTHO05D000240 4.7e-10 68.6 131 43.5
BcaC07g39654 Brassica carinata HOM05D000375 ORTHO05D000240 8.0e-10 67.8 129 41.9
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 8.0e-10 67.8 149 41.6
C08p28160 Brassica napus HOM05D000375 ORTHO05D000240 8.0e-10 67.8 129 41.9
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 8.0e-10 67.8 149 41.6
AT3G52910 Arabidopsis thaliana HOM05D000375 ORTHO05D000240 1.0e-09 67.4 130 43.8
A05p09370 Brassica napus HOM05D000375 ORTHO05D000240 1.0e-09 67.4 79 53.2
Aa31LG5G21580 Aethionema arabicum HOM05D000375 ORTHO05D000240 1.4e-09 67.0 74 50.0
A09p45970 Brassica napus HOM05D000375 ORTHO05D000240 1.8e-09 66.6 129 41.9
BraA05t19896Z Brassica rapa HOM05D000375 ORTHO05D000240 1.8e-09 66.6 78 48.7
BraA09t40058Z Brassica rapa HOM05D000375 ORTHO05D000240 1.8e-09 66.6 129 41.9
BcaB01g00330 Brassica carinata HOM05D000375 ORTHO05D000240 2.3e-09 66.2 140 40.7
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 8.9e-09 64.3 148 39.9
Lalb_Chr20g0112111 Lupinus albus HOM05D000375 ORTHO05D000240 8.9e-09 64.3 63 50.8
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 1.2e-08 63.9 129 42.6
BraA07t29817Z Brassica rapa HOM05D000375 ORTHO05D000240 1.2e-08 63.9 118 43.2
THA.LOC104805065 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 2.6e-08 62.8 142 36.6
Carub.0005s1939 Capsella rubella HOM05D000375 ORTHO05D000240 7.5e-08 61.2 142 41.5
CARHR162790 Cardamine hirsuta HOM05D000375 ORTHO05D000240 1.3e-07 60.5 132 40.2
CDE08G1460 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 1.1e-06 57.4 83 48.2
BraA04t16362Z Brassica rapa HOM05D000375 ORTHO05D000240 3.2e-06 55.8 133 38.3


User provided reference genes

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