Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013005 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 1.4e-101 372.9 179 100.0
CSS0013141 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 2.5e-82 308.9 206 78.2
Actinidia24049 Actinidia chinensis HOM05D005683 ORTHO05D006958 1.5e-63 246.5 173 71.1
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 2.6e-63 245.7 169 72.8
Dinv40458 Davidia involucrata HOM05D005683 ORTHO05D006958 2.2e-62 242.7 170 70.6
TAR626G0062 Trochodendron aralioides HOM05D005683 ORTHO05D006958 6.0e-60 234.6 175 65.1
Rhsim02G0118200 Rhododendron simsii HOM05D005683 ORTHO05D006958 2.3e-59 232.6 174 68.4
Rhsim02G0118400 Rhododendron simsii HOM05D005683 ORTHO05D006958 2.3e-59 232.6 174 68.4
TAR629G3446 Trochodendron aralioides HOM05D005683 ORTHO05D006958 5.7e-58 228.0 174 65.5
GSVIVG01003677001 Vitis vinifera HOM05D005683 ORTHO05D006958 1.2e-55 220.3 157 67.5
TAR627G0612 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.7e-54 216.5 173 63.6
MBI02_g38754_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 3.8e-54 215.3 174 60.9
Haze_06612 Corylus avellana HOM05D005683 ORTHO05D006958 1.1e-53 213.8 159 67.9
MBI02_g46153_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 1.4e-53 213.4 174 60.3
Lj2A278T71 Lonicera japonica HOM05D005683 ORTHO05D006958 5.5e-53 211.5 172 62.8
MD05G1328900 Malus domestica HOM05D005683 ORTHO05D006958 1.8e-51 206.5 149 69.1
COL.COLO4_31635 Corchorus olitorius HOM05D005683 ORTHO05D006958 1.9e-50 203.0 160 62.5
vmacro15855 Vaccinium macrocarpon HOM05D005683 ORTHO05D006958 1.9e-50 203.0 233 51.9
MD10G1305800 Malus domestica HOM05D005683 ORTHO05D006958 5.7e-50 201.4 149 67.1
CiPaw.10G115800 Carya illinoinensis HOM05D005683 ORTHO05D006958 7.4e-50 201.1 159 64.2
Potri.011G040100 Populus trichocarpa HOM05D005683 ORTHO05D006958 1.3e-49 200.3 159 64.2
Prupe.4G033900 Prunus persica HOM05D005683 ORTHO05D006958 1.3e-49 200.3 147 66.0
Cc02_g12200 Coffea canephora HOM05D005683 ORTHO05D006958 1.6e-49 199.9 170 58.8
Lj1A1216T22 Lonicera japonica HOM05D005683 ORTHO05D006958 8.2e-49 197.6 149 66.4
Oeu021580.1 Olea europaea HOM05D005683 ORTHO05D006958 8.2e-49 197.6 174 57.5
AUR62012512 Chenopodium quinoa HOM05D005683 ORTHO05D006958 3.1e-48 195.7 156 62.8
Nn1g03823 Nelumbo nucifera HOM05D005683 ORTHO05D006958 5.3e-48 194.9 170 58.8
QL05p080525 Quercus lobata HOM05D005683 ORTHO05D006958 5.3e-48 194.9 160 62.5
Atru.chr10.2035 Acer truncatum HOM05D005683 ORTHO05D006958 4.5e-47 191.8 146 65.8
Gohir.A05G166700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 2.2e-46 189.5 159 59.7
Gohir.D05G169700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 2.2e-46 189.5 159 59.7
Manes.17G032900 Manihot esculenta HOM05D005683 ORTHO05D006958 2.2e-46 189.5 157 62.4
Ciclev10016376m.g Citrus clementina HOM05D005683 ORTHO05D006958 3.8e-46 188.7 151 63.6
RcHm_v2.0_Chr5g0005711 Rosa chinensis HOM05D005683 ORTHO05D006958 3.8e-46 188.7 157 58.0
FAN21G2210 Fragaria x ananassa HOM05D005683 ORTHO05D006958 5.0e-46 188.3 157 58.6
FvH4_3g03670 Fragaria vesca HOM05D005683 ORTHO05D006958 6.5e-46 188.0 157 58.0
FAN11G3671 Fragaria x ananassa HOM05D005683 ORTHO05D006958 6.5e-46 188.0 157 58.0
FAN16G0586 Fragaria x ananassa HOM05D005683 ORTHO05D006958 6.5e-46 188.0 157 58.0
FAN25G1197 Fragaria x ananassa HOM05D005683 ORTHO05D006958 6.5e-46 188.0 157 58.6
Gorai.009G174900 Gossypium raimondii HOM05D005683 ORTHO05D006958 6.5e-46 188.0 159 59.7
Lalb_Chr09g0327231 Lupinus albus HOM05D005683 ORTHO05D006958 6.5e-46 188.0 143 63.6
MSTRG.7277 Avicennia marina HOM05D005683 ORTHO05D006958 8.5e-46 187.6 174 54.6
TWI38G0326 Tripterygium wilfordii HOM05D005683 ORTHO05D006958 8.5e-46 187.6 136 65.4
Ah.09g236340 Amaranthus hybridus HOM05D005683 ORTHO05D006958 1.9e-45 186.4 156 60.3
Lj6g0011505 Lotus japonicus HOM05D005683 ORTHO05D006958 1.9e-45 186.4 156 59.6
PSO541G3127 Papaver somniferum HOM05D005683 ORTHO05D006958 1.2e-44 183.7 173 53.2
SGA_v2.0_scaffold114G31992 Striga asiatica HOM05D005683 ORTHO05D006958 1.6e-44 183.3 171 56.1
arahy.Tifrunner.gnm1.ann1.1EQ2T2 Arachis hypogaea HOM05D005683 ORTHO05D006958 2.7e-44 182.6 148 60.8
arahy.Tifrunner.gnm1.ann1.YX67LP Arachis hypogaea HOM05D005683 ORTHO05D006958 6.1e-44 181.4 148 60.1
PSO675G7592 Papaver somniferum HOM05D005683 ORTHO05D006958 6.1e-44 181.4 173 53.8
Lalb_Chr05g0218101 Lupinus albus HOM05D005683 ORTHO05D006958 7.9e-44 181.0 141 61.7
CiPaw.09G156400 Carya illinoinensis HOM05D005683 ORTHO05D006958 1.8e-43 179.9 159 57.9
Potri.004G026700 Populus trichocarpa HOM05D005683 ORTHO05D006958 1.8e-43 179.9 159 57.2
Manes.16G019184 Manihot esculenta HOM05D005683 ORTHO05D006958 6.7e-43 177.9 143 62.2
Eucgr.E03677 Eucalyptus grandis HOM05D005683 ORTHO05D006958 1.1e-42 177.2 155 58.1
Hund21293 Selenicereus undatus HOM05D005683 ORTHO05D006958 1.1e-42 177.2 149 57.0
Sc17g0006760 Simmondsia chinensis HOM05D005683 ORTHO05D006958 1.1e-42 177.2 138 63.0
PGR042G1297 Punica granatum HOM05D005683 ORTHO05D006958 1.5e-42 176.8 151 59.6
Lsat_1_v5_gn_7_20320 Lactuca sativa HOM05D005683 ORTHO05D006958 2.0e-42 176.4 156 59.6
VMungo0251G1023 Vigna mungo HOM05D005683 ORTHO05D006958 2.0e-42 176.4 140 60.0
VMungo0540G1177 Vigna mungo HOM05D005683 ORTHO05D006958 4.3e-42 175.3 153 56.9
Cpa.g.sc27.157 Carica papaya HOM05D005683 ORTHO05D006958 9.7e-42 174.1 151 61.6
Gohir.D10G020000 Gossypium hirsutum HOM05D005683 ORTHO05D006958 2.8e-41 172.6 152 57.9
Nitab4.5_0005620g0030 Nicotiana tabacum HOM05D005683 ORTHO05D006958 2.8e-41 172.6 148 59.5
Gohir.A10G019100 Gossypium hirsutum HOM05D005683 ORTHO05D006958 3.7e-41 172.2 152 57.9
Hund23579 Selenicereus undatus HOM05D005683 ORTHO05D006958 6.3e-41 171.4 145 56.6
Gorai.011G021200 Gossypium raimondii HOM05D005683 ORTHO05D006958 8.2e-41 171.0 152 57.9
Phvul.006G193600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 8.2e-41 171.0 153 55.6
MELO3C007336.2 Cucumis melo HOM05D005683 ORTHO05D006958 1.1e-40 170.6 157 58.0
Medtr2g011490 Medicago truncatula HOM05D005683 ORTHO05D006958 1.1e-40 170.6 141 60.3
TPR.G15376 Trifolium pratense HOM05D005683 ORTHO05D006958 1.1e-40 170.6 138 61.6
TPR.G36735 Trifolium pratense HOM05D005683 ORTHO05D006958 1.1e-40 170.6 141 60.3
Glyma.13G247700 Glycine max HOM05D005683 ORTHO05D006958 1.8e-40 169.9 156 54.5
Nitab4.5_0000649g0210 Nicotiana tabacum HOM05D005683 ORTHO05D006958 1.8e-40 169.9 144 59.7
Phvul.002G220600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 1.8e-40 169.9 145 57.2
Lalb_Chr18g0060021 Lupinus albus HOM05D005683 ORTHO05D006958 3.1e-40 169.1 142 57.0
Glyma.15G066100 Glycine max HOM05D005683 ORTHO05D006958 4.1e-40 168.7 156 56.4
Peaxi162Scf01035g00114 Petunia axillaris HOM05D005683 ORTHO05D006958 4.1e-40 168.7 144 59.7
Sed0004151 Sechium edule HOM05D005683 ORTHO05D006958 4.1e-40 168.7 157 58.0
Sopen02g024190 Solanum pennellii HOM05D005683 ORTHO05D006958 4.1e-40 168.7 141 58.9
Psat1g209480 Pisum sativum HOM05D005683 ORTHO05D006958 5.3e-40 168.3 141 58.9
Solyc02g079390.4 Solanum lycopersicum HOM05D005683 ORTHO05D006958 5.3e-40 168.3 141 58.2
Thecc.06G202400 Theobroma cacao HOM05D005683 ORTHO05D006958 5.3e-40 168.3 148 58.1
CsaV3_6G049570 Cucumis sativus L. HOM05D005683 ORTHO05D006958 6.9e-40 167.9 157 57.3
Ca_00226_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 2.6e-39 166.0 136 60.3
HanXRQChr15g0482541 Helianthus annuus HOM05D005683 ORTHO05D006958 3.4e-39 165.6 144 59.7
Medtr4g091550 Medicago truncatula HOM05D005683 ORTHO05D006958 3.4e-39 165.6 139 59.7
PGSC0003DMG400022348 Solanum tuberosum HOM05D005683 ORTHO05D006958 3.4e-39 165.6 141 58.2
CAN.G424.37 Capsicum annuum HOM05D005683 ORTHO05D006958 5.9e-39 164.9 141 58.9
ECA236G4035 Erigeron canadensis HOM05D005683 ORTHO05D006958 5.9e-39 164.9 144 58.3
ClCG01G022390 Citrullus lanatus HOM05D005683 ORTHO05D006958 1.3e-38 163.7 157 56.1
CANSAT56G4448 Cannabis sativa HOM05D005683 ORTHO05D006958 1.7e-38 163.3 138 57.2
DCAR_004160 Daucus carota HOM05D005683 ORTHO05D006958 2.9e-38 162.5 143 55.9
Sed0027497 Sechium edule HOM05D005683 ORTHO05D006958 2.9e-38 162.5 160 56.2
Lj4g0024466 Lotus japonicus HOM05D005683 ORTHO05D006958 5.5e-37 158.3 155 54.8
AL1G22470 Arabidopsis lyrata HOM05D005683 ORTHO05D006958 1.2e-36 157.1 143 58.7
THA.LOC104818970 Tarenaya hassleriana HOM05D005683 ORTHO05D006958 2.7e-36 156.0 151 53.6
BcaC05g25012 Brassica carinata HOM05D005683 ORTHO05D006958 3.6e-36 155.6 145 56.6
Carub.0001s1101 Capsella rubella HOM05D005683 ORTHO05D006958 3.6e-36 155.6 145 56.6
Aa31LG1G3330 Aethionema arabicum HOM05D005683 ORTHO05D006958 4.7e-36 155.2 145 55.2
AT1G11380 Arabidopsis thaliana HOM05D005683 ORTHO05D006958 2.3e-35 152.9 142 54.2
CARHR011620 Cardamine hirsuta HOM05D005683 ORTHO05D006958 2.3e-35 152.9 145 54.5
Migut.H01529 Erythranthe guttata HOM05D005683 ORTHO05D006958 5.1e-35 151.8 165 50.9
A06p08000 Brassica napus HOM05D005683 ORTHO05D006958 1.1e-34 150.6 145 55.2
BraA06t23999Z Brassica rapa HOM05D005683 ORTHO05D006958 1.1e-34 150.6 145 55.2
CDE02G0678 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 1.1e-34 150.6 176 45.5
Ca_18471_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 2.0e-34 149.8 140 56.4
HPP92_000912 Vanilla planifolia HOM05D005683 ORTHO05D006958 3.3e-34 149.1 172 49.4
Zm00001eb323790 Zea mays HOM05D005683 ORTHO05D006958 5.7e-34 148.3 173 46.2
C05p09600 Brassica napus HOM05D005683 ORTHO05D006958 2.2e-33 146.4 145 54.5
BolC5t29702H Brassica oleracea HOM05D005683 ORTHO05D006958 2.2e-33 146.4 145 54.5
unitig_748.g7566 Utricularia gibba HOM05D005683 ORTHO05D006958 7.0e-32 141.4 149 51.0
Migut.M01228 Erythranthe guttata HOM05D005683 ORTHO05D006958 9.1e-32 141.0 150 50.7
Glyma.07G188900 Glycine max HOM05D005683 ORTHO05D006958 2.0e-31 139.8 136 51.5
ATR1132G083 Amborella trichopoda HOM05D005683 ORTHO05D006958 6.5e-30 134.8 119 53.8
AUR62014686 Chenopodium quinoa HOM05D005683 ORTHO05D006958 1.5e-29 133.7 84 72.6
Duzib192G0920 Durio zibethinus HOM05D005683 ORTHO05D006958 3.2e-29 132.5 107 59.8
arahy.Tifrunner.gnm1.ann1.NC80VA Arachis hypogaea HOM05D005683 ORTHO05D006958 9.4e-29 131.0 151 48.3
EL10Ac8g19981 Beta vulgaris HOM05D005683 ORTHO05D006958 1.2e-28 130.6 78 74.4
Duzib235G0662 Durio zibethinus HOM05D005683 ORTHO05D006958 2.1e-28 129.8 105 60.0
arahy.Tifrunner.gnm1.ann1.B3SD72 Arachis hypogaea HOM05D005683 ORTHO05D006958 1.8e-27 126.7 143 49.0
Sp1g10010 Schrenkiella parvula HOM05D005683 ORTHO05D006958 3.5e-23 112.5 73 71.2
Prupe.5G244100 Prunus persica HOM05D005683 ORTHO05D006958 4.2e-21 105.5 94 54.3
Pp3c21_1800 Physcomitrium patens HOM05D005683 ORTHO05D006958 3.4e-18 95.9 176 34.1
Glyma.08G060400 Glycine max HOM05D005683 ORTHO05D006958 4.5e-15 85.5 95 48.4
Pp3c18_19760 Physcomitrium patens HOM05D005683 ORTHO05D006958 1.3e-14 84.0 121 38.0
TAR629G2478 Trochodendron aralioides HOM05D005683 ORTHO05D006958 2.0e-10 70.1 54 68.5


User provided reference genes

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