Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 6.9e-111 404.1 214 100.0
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 4.3e-81 305.1 188 79.3
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 9.7e-81 303.9 162 88.9
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 1.5e-78 296.6 161 87.0
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 2.0e-78 296.2 225 72.4
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 2.6e-78 295.8 161 87.0
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 4.5e-78 295.0 163 84.7
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 5.9e-78 294.7 159 85.5
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 7.7e-78 294.3 188 76.1
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.0e-77 293.9 161 83.2
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.9e-77 292.4 188 76.6
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 3.8e-77 292.0 161 86.3
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 5.0e-77 291.6 189 74.6
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 6.5e-77 291.2 163 84.0
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 8.5e-77 290.8 190 75.8
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 8.5e-77 290.8 190 77.4
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.4e-76 290.0 193 74.6
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 1.9e-76 289.7 163 83.4
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 1.9e-76 289.7 163 84.0
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 2.5e-76 289.3 190 75.8
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 3.2e-76 288.9 191 74.3
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 3.2e-76 288.9 161 83.2
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 5.5e-76 288.1 161 82.6
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 1.2e-75 287.0 186 76.3
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.2e-75 287.0 163 84.0
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.6e-75 286.6 163 83.4
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 2.1e-75 286.2 161 81.4
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 2.1e-75 286.2 161 81.4
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 2.1e-75 286.2 161 83.2
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 2.7e-75 285.8 161 83.9
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 7.9e-75 284.3 191 70.2
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 7.9e-75 284.3 190 76.8
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.0e-74 283.9 161 81.4
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 2.3e-74 282.7 158 82.9
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 3.9e-74 282.0 161 81.4
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 3.9e-74 282.0 156 84.0
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 6.7e-74 281.2 161 82.0
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 6.7e-74 281.2 162 80.2
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 1.5e-73 280.0 162 82.1
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 2.0e-73 279.6 188 71.8
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.6e-73 279.3 161 81.4
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.6e-73 279.3 161 81.4
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.6e-73 279.3 161 81.4
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 2.6e-73 279.3 188 71.3
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 3.3e-73 278.9 162 80.9
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 3.3e-73 278.9 190 70.0
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 3.3e-73 278.9 161 80.7
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 4.4e-73 278.5 161 80.7
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 7.4e-73 277.7 158 80.4
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 7.4e-73 277.7 188 70.7
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 1.7e-72 276.6 161 80.7
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 2.2e-72 276.2 162 80.2
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 2.8e-72 275.8 190 70.0
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.8e-72 275.8 192 70.8
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 3.7e-72 275.4 190 70.0
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 3.7e-72 275.4 185 72.4
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 6.3e-72 274.6 163 79.8
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 6.3e-72 274.6 161 80.1
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 1.8e-71 273.1 161 78.9
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 3.1e-71 272.3 161 78.3
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 4.1e-71 271.9 189 70.9
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 4.1e-71 271.9 161 78.9
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 4.1e-71 271.9 161 78.9
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 5.3e-71 271.6 161 78.9
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 5.3e-71 271.6 188 69.7
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 7.0e-71 271.2 162 79.6
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.2e-70 270.4 154 78.6
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.6e-70 270.0 189 69.3
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 2.0e-70 269.6 160 80.0
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 2.0e-70 269.6 162 80.9
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 2.0e-70 269.6 163 78.5
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 2.6e-70 269.2 186 72.0
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 3.5e-70 268.9 186 69.4
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 5.9e-70 268.1 163 77.9
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 7.7e-70 267.7 184 71.7
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 7.7e-70 267.7 186 71.0
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 1.0e-69 267.3 160 75.0
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.0e-69 267.3 185 66.5
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 1.7e-69 266.5 185 67.0
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 1.7e-69 266.5 160 75.0
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 1.7e-69 266.5 158 75.9
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.9e-69 265.8 153 81.0
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 2.9e-69 265.8 185 64.9
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 2.9e-69 265.8 185 65.9
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 3.8e-69 265.4 157 79.0
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 8.5e-69 264.2 185 67.0
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 1.5e-68 263.5 184 64.7
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 1.5e-68 263.5 184 64.7
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 1.9e-68 263.1 161 73.9
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.9e-68 263.1 177 74.0
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 3.2e-68 262.3 160 77.5
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 3.2e-68 262.3 188 68.1
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 4.2e-68 261.9 161 74.5
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 5.5e-68 261.5 155 76.1
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 5.5e-68 261.5 185 63.8
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 5.5e-68 261.5 185 63.8
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 9.4e-68 260.8 160 76.2
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 2.1e-67 259.6 236 57.6
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 2.1e-67 259.6 158 72.8
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 2.7e-67 259.2 154 75.3
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 2.7e-67 259.2 160 76.9
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 2.7e-67 259.2 152 78.9
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 3.6e-67 258.8 152 75.0
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 4.7e-67 258.5 151 76.8
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 5.2e-66 255.0 188 63.8
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 8.8e-66 254.2 190 67.9
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.5e-65 253.4 190 66.8
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 4.4e-65 251.9 183 67.2
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 1.4e-63 246.9 161 67.7
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 5.3e-63 245.0 157 83.4
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.0e-61 240.7 181 65.2
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.3e-61 240.4 190 64.7
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 3.8e-61 238.8 132 84.1
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 2.3e-58 229.6 138 77.5
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 4.0e-58 228.8 123 85.4
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.5e-57 226.9 132 77.3
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 3.4e-57 225.7 183 61.7
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 2.7e-54 216.1 116 85.3
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 5.5e-52 208.4 159 59.1
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 2.0e-49 199.9 182 53.8
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 4.4e-49 198.7 190 57.4
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 5.4e-47 191.8 203 46.8
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 8.0e-43 177.9 100 82.0
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 6.8e-42 174.9 144 55.6
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.7e-40 170.2 151 57.6
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 1.7e-40 170.2 148 56.8
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 1.5e-33 147.1 182 47.3
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 1.3e-32 144.1 145 46.9
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 1.1e-20 104.4 162 40.7
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.7e-14 83.2 43 88.4
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 9.6e-12 74.7 43 76.7
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 8.9e-10 68.2 38 78.9
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.2e-09 67.8 38 78.9
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 2.4e-07 60.1 37 73.0
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 7.1e-07 58.5 162 24.1
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.3e-07 58.2 28 92.9
LjContig00312_ERROPOS870357g0000946 Lotus japonicus HOM05D001916 ORTHO05D003272 3.5e-06 56.2 166 22.9
Ca_24534_v3 Cicer arietinum L. HOM05D001916 ORTHO05D003272 6.0e-06 55.5 162 23.5


User provided reference genes

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