Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 5.2e-67 257.7 140 100.0
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.7e-63 245.4 140 93.6
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 9.9e-50 200.3 141 76.6
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 4.9e-49 198.0 140 75.0
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.1e-48 196.8 140 75.0
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 7.1e-48 194.1 140 72.9
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 9.2e-48 193.7 140 74.3
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 2.1e-47 192.6 143 72.7
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 6.0e-47 191.0 140 72.1
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 1.7e-46 189.5 140 72.1
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 1.7e-46 189.5 140 71.4
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 2.3e-46 189.1 140 71.4
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 1.1e-45 186.8 141 71.6
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 4.3e-45 184.9 140 72.1
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 2.8e-44 182.2 141 71.6
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 6.2e-44 181.0 137 71.5
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 6.2e-44 181.0 141 68.8
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 1.8e-43 179.5 140 68.6
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 2.4e-43 179.1 142 69.7
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 2.4e-43 179.1 141 68.8
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 3.1e-43 178.7 140 68.6
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.2e-42 176.8 140 70.0
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 1.5e-42 176.4 141 68.8
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.5e-42 176.4 141 68.1
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.5e-42 176.4 141 70.2
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 2.0e-42 176.0 140 67.9
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 3.4e-42 175.3 140 69.3
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 3.4e-42 175.3 140 66.4
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 4.4e-42 174.9 142 69.0
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 4.4e-42 174.9 141 68.1
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 5.8e-42 174.5 141 68.8
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 5.8e-42 174.5 141 68.8
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 5.8e-42 174.5 140 67.9
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 5.8e-42 174.5 140 67.1
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 7.6e-42 174.1 140 66.4
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 9.9e-42 173.7 141 66.0
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 9.9e-42 173.7 141 67.4
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.2e-41 172.6 140 67.1
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 2.2e-41 172.6 140 66.4
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 8.4e-41 170.6 141 67.4
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 1.1e-40 170.2 142 66.9
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.4e-40 169.9 142 66.9
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.9e-40 169.5 141 67.4
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 2.4e-40 169.1 140 65.7
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.4e-40 169.1 141 67.4
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 3.2e-40 168.7 141 67.4
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 4.2e-40 168.3 140 62.9
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 5.4e-40 167.9 138 63.8
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 7.1e-40 167.5 140 65.7
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 7.1e-40 167.5 141 67.4
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 9.3e-40 167.2 141 66.7
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 1.6e-39 166.4 140 62.9
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.6e-39 166.4 141 65.2
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 2.1e-39 166.0 142 65.5
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 2.7e-39 165.6 140 62.1
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 3.5e-39 165.2 142 65.5
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 3.5e-39 165.2 140 64.3
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 3.5e-39 165.2 142 66.2
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 3.5e-39 165.2 140 63.6
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 3.5e-39 165.2 172 56.4
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 4.6e-39 164.9 140 62.9
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 4.6e-39 164.9 140 62.9
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 6.0e-39 164.5 140 63.6
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 7.8e-39 164.1 116 73.3
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.0e-38 163.7 140 62.1
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.0e-38 163.7 140 63.6
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 1.0e-38 163.7 143 62.9
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.7e-38 162.9 144 64.6
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 1.7e-38 162.9 140 65.0
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 2.3e-38 162.5 140 61.4
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 2.3e-38 162.5 139 64.7
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 3.9e-38 161.8 140 63.6
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 5.1e-38 161.4 118 72.9
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 6.6e-38 161.0 139 64.7
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 8.7e-38 160.6 144 64.6
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 1.1e-37 160.2 140 63.6
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 1.9e-37 159.5 144 63.9
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 4.3e-37 158.3 140 60.7
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 5.6e-37 157.9 140 60.7
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 9.6e-37 157.1 141 61.7
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.3e-36 156.8 141 60.3
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.3e-36 156.8 141 61.7
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 1.3e-36 156.8 140 60.0
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.6e-36 156.4 142 64.1
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 1.6e-36 156.4 144 63.2
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 2.1e-36 156.0 141 60.3
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 4.8e-36 154.8 142 63.4
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 4.8e-36 154.8 105 74.3
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 1.1e-35 153.7 141 59.6
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 2.4e-35 152.5 139 58.3
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 3.1e-35 152.1 141 59.6
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.1e-35 152.1 128 66.4
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 3.1e-35 152.1 142 59.2
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 6.9e-35 151.0 117 67.5
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 6.9e-35 151.0 140 59.3
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 9.0e-35 150.6 121 66.9
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 1.2e-34 150.2 139 59.0
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 1.2e-34 150.2 139 59.0
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 1.2e-34 150.2 139 59.0
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 1.2e-34 150.2 139 59.0
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.2e-34 150.2 141 58.9
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 1.5e-34 149.8 140 59.3
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 1.5e-34 149.8 104 71.2
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 1.5e-34 149.8 120 65.8
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 2.6e-34 149.1 117 66.7
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 3.4e-34 148.7 140 58.6
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 4.5e-34 148.3 140 58.6
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 4.5e-34 148.3 105 71.4
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 5.8e-34 147.9 139 57.6
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 7.6e-34 147.5 159 55.3
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 9.9e-34 147.1 131 61.8
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 9.9e-34 147.1 90 80.0
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 2.2e-33 146.0 143 56.6
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 2.9e-33 145.6 143 57.3
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 4.9e-33 144.8 104 72.1
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 4.2e-32 141.7 212 45.3
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 7.1e-32 141.0 131 58.0
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 1.8e-30 136.3 113 61.9
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 6.7e-30 134.4 117 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 1.3e-28 130.2 107 58.9
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 1.6e-28 129.8 89 69.7
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 2.8e-28 129.0 140 52.9
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 2.8e-28 129.0 146 53.4
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 3.4e-26 122.1 101 60.4
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 4.5e-26 121.7 89 64.0
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 1.3e-25 120.2 144 50.0
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 3.8e-25 118.6 70 81.4
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 4.9e-25 118.2 92 72.8
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 6.4e-25 117.9 96 59.4
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 3.2e-24 115.5 121 57.0
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 2.5e-21 105.9 112 58.9
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 2.5e-21 105.9 96 52.1
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 6.9e-19 97.8 74 67.6
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 7.1e-16 87.8 68 64.7
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 4.6e-15 85.1 91 53.8
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 1.3e-14 83.6 112 50.9
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 4.1e-11 72.0 91 50.5
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 1.1e-08 63.9 77 51.9
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 7.2e-08 61.2 40 75.0
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 5.1e-06 55.1 35 74.3


User provided reference genes

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