Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012967 Camellia sinensis var. sinensis HOM05D000828 ORTHO05D000623 4.9e-58 227.6 120 100.0
Rhsim10G0129100 Rhododendron simsii HOM05D000828 ORTHO05D000623 8.2e-29 130.6 123 61.8
vmacro12769 Vaccinium macrocarpon HOM05D000828 ORTHO05D000623 3.2e-25 118.6 131 55.7
Sc16g0009650 Simmondsia chinensis HOM05D000828 ORTHO05D000623 1.8e-23 112.8 101 59.4
Hma1.2p1_0134F.1_g061590 Hydrangea macrophylla HOM05D000828 ORTHO05D000623 4.0e-23 111.7 108 57.4
QL10p039976 Quercus lobata HOM05D000828 ORTHO05D000623 4.0e-23 111.7 111 57.7
TAR625G0688 Trochodendron aralioides HOM05D000828 ORTHO05D000623 3.3e-22 108.6 110 54.5
arahy.Tifrunner.gnm1.ann1.5PG8C6 Arachis hypogaea HOM05D000828 ORTHO05D000623 4.4e-22 108.2 118 53.4
TWI31G1014 Tripterygium wilfordii HOM05D000828 ORTHO05D000623 4.4e-22 108.2 112 54.5
Actinidia20054 Actinidia chinensis HOM05D000828 ORTHO05D000623 7.5e-22 107.5 107 56.1
Glyma.05G195200 Glycine max HOM05D000828 ORTHO05D000623 9.7e-22 107.1 115 50.4
CiPaw.04G077600 Carya illinoinensis HOM05D000828 ORTHO05D000623 1.7e-21 106.3 101 55.4
Phvul.002G275400 Phaseolus vulgaris HOM05D000828 ORTHO05D000623 1.7e-21 106.3 115 49.6
RcHm_v2.0_Chr2g0123401 Rosa chinensis HOM05D000828 ORTHO05D000623 1.7e-21 106.3 103 54.4
Lj4g0022788 Lotus japonicus HOM05D000828 ORTHO05D000623 2.2e-21 105.9 107 52.3
Potri.007G098800 Populus trichocarpa HOM05D000828 ORTHO05D000623 2.2e-21 105.9 103 54.4
CiPaw.03G116100 Carya illinoinensis HOM05D000828 ORTHO05D000623 2.8e-21 105.5 114 53.5
PSO528G0190 Papaver somniferum HOM05D000828 ORTHO05D000623 2.8e-21 105.5 116 50.0
CiPaw.03G116000 Carya illinoinensis HOM05D000828 ORTHO05D000623 4.8e-21 104.8 116 48.3
Atru.chr4.1104 Acer truncatum HOM05D000828 ORTHO05D000623 6.3e-21 104.4 114 51.8
TAR628G1544 Trochodendron aralioides HOM05D000828 ORTHO05D000623 6.3e-21 104.4 108 53.7
Nitab4.5_0010209g0020 Nicotiana tabacum HOM05D000828 ORTHO05D000623 8.3e-21 104.0 109 52.3
COL.COLO4_12110 Corchorus olitorius HOM05D001914 ORTHO05D000623 1.1e-20 103.6 111 55.0
HanXRQChr15g0468941 Helianthus annuus HOM05D000828 ORTHO05D000623 1.1e-20 103.6 96 59.4
Medtr8g094690 Medicago truncatula HOM05D000828 ORTHO05D000623 1.1e-20 103.6 98 53.1
Oeu050101.1 Olea europaea HOM05D000828 ORTHO05D000623 1.1e-20 103.6 103 52.4
TPR.G37298 Trifolium pratense HOM05D000828 ORTHO05D000623 1.1e-20 103.6 98 53.1
Eucgr.H05080 Eucalyptus grandis HOM05D000828 ORTHO05D000623 1.4e-20 103.2 102 53.9
Cpa.g.sc37.34 Carica papaya HOM05D000828 ORTHO05D000623 3.1e-20 102.1 118 50.8
HanXRQChr12g0380481 Helianthus annuus HOM05D000828 ORTHO05D000623 1.2e-19 100.1 113 49.6
ECA233G2612 Erigeron canadensis HOM05D000828 ORTHO05D000623 1.6e-19 99.8 102 54.9
Ca_17612_v3 Cicer arietinum L. HOM05D000828 ORTHO05D000623 2.0e-19 99.4 102 52.9
Haze_25349 Corylus avellana HOM05D000828 ORTHO05D000623 2.0e-19 99.4 105 48.6
PGR102G0685 Punica granatum HOM05D000828 ORTHO05D000623 2.0e-19 99.4 109 49.5
Lsat_1_v5_gn_5_68961 Lactuca sativa HOM05D000828 ORTHO05D000623 2.7e-19 99.0 115 50.4
Nitab4.5_0000496g0170 Nicotiana tabacum HOM05D000828 ORTHO05D000623 2.7e-19 99.0 109 50.5
Aqoxy6G00246 Aquilegia oxysepala HOM05D000828 ORTHO05D000623 3.5e-19 98.6 116 51.7
Gohir.A09G006200 Gossypium hirsutum HOM05D000828 ORTHO05D000623 3.5e-19 98.6 99 53.5
Psat7g043720 Pisum sativum HOM05D000828 ORTHO05D000623 3.5e-19 98.6 96 55.2
HanXRQChr15g0468961 Helianthus annuus HOM05D000828 ORTHO05D000623 4.5e-19 98.2 96 57.3
FvH4_1g25360 Fragaria vesca HOM05D000828 ORTHO05D000623 7.7e-19 97.4 102 49.0
Gohir.D09G005300 Gossypium hirsutum HOM05D000828 ORTHO05D000623 7.7e-19 97.4 99 52.5
Gorai.006G006900 Gossypium raimondii HOM05D000828 ORTHO05D000623 7.7e-19 97.4 99 52.5
HanXRQChr06g0183741 Helianthus annuus HOM05D000828 ORTHO05D000623 7.7e-19 97.4 96 56.2
HanXRQChr15g0476241 Helianthus annuus HOM05D000828 ORTHO05D000623 7.7e-19 97.4 96 56.2
HanXRQChr15g0476251 Helianthus annuus HOM05D000828 ORTHO05D000623 7.7e-19 97.4 96 56.2
Oeu028236.1 Olea europaea HOM05D000828 ORTHO05D000623 7.7e-19 97.4 102 51.0
Ah.02g117590 Amaranthus hybridus HOM05D000828 ORTHO05D000623 1.7e-18 96.3 100 51.0
Peaxi162Scf00353g00023 Petunia axillaris HOM05D000828 ORTHO05D000623 1.7e-18 96.3 114 47.4
HanXRQChr01g0017081 Helianthus annuus HOM05D000828 ORTHO05D000623 2.2e-18 95.9 104 50.0
AUR62006897 Chenopodium quinoa HOM05D000828 ORTHO05D000623 2.9e-18 95.5 100 51.0
PGSC0003DMG400023327 Solanum tuberosum HOM05D000828 ORTHO05D000623 2.9e-18 95.5 104 48.1
FAN23G1352 Fragaria x ananassa HOM05D000828 ORTHO05D000623 5.0e-18 94.7 102 47.1
PGR102G2234 Punica granatum HOM05D000828 ORTHO05D000623 5.0e-18 94.7 102 46.1
FAN19G0657 Fragaria x ananassa HOM05D000828 ORTHO05D000623 6.5e-18 94.4 106 49.1
CAN.G1156.37 Capsicum annuum HOM05D000828 ORTHO05D000623 8.5e-18 94.0 98 53.1
Ciclev10002078m.g Citrus clementina HOM05D000828 ORTHO05D000623 1.1e-17 93.6 106 44.3
FvH4_1g25300 Fragaria vesca HOM05D000828 ORTHO05D000623 1.1e-17 93.6 106 49.1
GSVIVG01022365001 Vitis vinifera HOM05D000828 ORTHO05D000623 1.1e-17 93.6 98 55.1
AUR62000546 Chenopodium quinoa HOM05D000828 ORTHO05D000623 1.5e-17 93.2 105 48.6
AUR62006898 Chenopodium quinoa HOM05D000828 ORTHO05D000623 1.5e-17 93.2 104 48.1
Migut.H00833 Erythranthe guttata HOM05D000828 ORTHO05D000623 1.5e-17 93.2 118 49.2
FAN26G1171 Fragaria x ananassa HOM05D000828 ORTHO05D000623 2.5e-17 92.4 102 46.1
Oeu037850.1 Olea europaea HOM05D000828 ORTHO05D000623 2.5e-17 92.4 100 48.0
DCAR_013177 Daucus carota HOM05D000828 ORTHO05D000623 3.2e-17 92.0 102 52.0
Ah.06g188610 Amaranthus hybridus HOM05D000828 ORTHO05D000623 4.2e-17 91.7 98 48.0
EL10Ac4g09671 Beta vulgaris HOM05D000828 ORTHO05D000623 4.2e-17 91.7 105 49.5
Migut.L00272 Erythranthe guttata HOM05D000828 ORTHO05D000623 4.2e-17 91.7 100 50.0
FAN26G1761 Fragaria x ananassa HOM05D000828 ORTHO05D000623 4.2e-17 91.7 106 48.1
FAN26G2657 Fragaria x ananassa HOM05D000828 ORTHO05D000623 4.2e-17 91.7 106 48.1
EL10Ac4g09670 Beta vulgaris HOM05D000828 ORTHO05D000623 9.4e-17 90.5 100 51.0
Lsat_1_v5_gn_1_80521 Lactuca sativa HOM05D000828 ORTHO05D000623 9.4e-17 90.5 100 48.0
MD15G1138000 Malus domestica HOM05D000828 ORTHO05D000623 9.4e-17 90.5 102 49.0
MBI03_g28303_MAGBIO Magnolia biondii HOM05D000828 ORTHO05D000623 1.2e-16 90.1 105 47.6
Prupe.4G280800 Prunus persica HOM05D000828 ORTHO05D000623 1.6e-16 89.7 102 46.1
ECA248G0624 Erigeron canadensis HOM05D000828 ORTHO05D000623 2.1e-16 89.4 103 47.6
Nitab4.5_0002111g0010 Nicotiana tabacum HOM05D000828 ORTHO05D000623 3.6e-16 88.6 102 46.1
Lsat_1_v5_gn_1_80501 Lactuca sativa HOM05D000828 ORTHO05D000623 6.1e-16 87.8 100 47.0
Lsat_1_v5_gn_1_80561 Lactuca sativa HOM05D000828 ORTHO05D000623 6.1e-16 87.8 100 51.0
Solyc05g056410.1 Solanum lycopersicum HOM05D000828 ORTHO05D000623 6.1e-16 87.8 95 47.4
Cc10_g12050 Coffea canephora HOM05D000828 ORTHO05D000623 8.0e-16 87.4 108 47.2
AUR62000548 Chenopodium quinoa HOM05D000828 ORTHO05D000623 1.4e-15 86.7 98 48.0
Lalb_Chr12g0202961 Lupinus albus HOM05D000828 ORTHO05D000623 1.4e-15 86.7 104 49.0
Sopen05g034800 Solanum pennellii HOM05D000828 ORTHO05D000623 2.3e-15 85.9 100 48.0
AUR62000547 Chenopodium quinoa HOM05D000828 ORTHO05D000623 1.2e-14 83.6 104 43.3
AUR62006900 Chenopodium quinoa HOM05D000828 ORTHO05D000623 1.5e-14 83.2 98 44.9
Gohir.D11G327100 Gossypium hirsutum HOM05D000828 ORTHO05D000623 1.5e-14 83.2 109 43.1
FvH4_1g25372 Fragaria vesca HOM05D000828 ORTHO05D000623 2.0e-14 82.8 103 48.5
HanXRQChr01g0017071 Helianthus annuus HOM05D000828 ORTHO05D000623 2.0e-14 82.8 101 46.5
Gorai.007G358000 Gossypium raimondii HOM05D000828 ORTHO05D000623 3.4e-14 82.0 111 43.2
Nitab4.5_0000167g0250 Nicotiana tabacum HOM05D000828 ORTHO05D000623 3.4e-14 82.0 99 44.4
CsaV3_4G030930 Cucumis sativus L. HOM05D000828 ORTHO05D000623 7.5e-14 80.9 107 43.0
MELO3C008968.2 Cucumis melo HOM05D000828 ORTHO05D000623 9.8e-14 80.5 107 42.1
Gohir.A11G310700 Gossypium hirsutum HOM05D000828 ORTHO05D000623 9.8e-14 80.5 107 42.1
Peaxi162Scf00574g00033 Petunia axillaris HOM05D000828 ORTHO05D000623 9.8e-14 80.5 99 44.4
SalBow6G2577 Salvia bowleyana HOM05D000828 ORTHO05D000623 9.8e-14 80.5 98 49.0
AUR62006899 Chenopodium quinoa HOM05D000828 ORTHO05D000623 2.8e-13 79.0 104 47.1
Duzib264G0630 Durio zibethinus HOM05D000828 ORTHO05D000623 2.8e-13 79.0 92 51.1
Migut.A00656 Erythranthe guttata HOM05D000828 ORTHO05D000623 1.1e-12 77.0 101 43.6
Migut.A00650 Erythranthe guttata HOM05D000828 ORTHO05D000623 1.4e-12 76.6 102 46.1
FAN28G2246 Fragaria x ananassa HOM05D000828 ORTHO05D000623 4.1e-12 75.1 95 44.2
Migut.I00366 Erythranthe guttata HOM05D000828 ORTHO05D000623 7.0e-12 74.3 98 45.9
ClCG04G001590 Citrullus lanatus HOM05D000828 ORTHO05D000623 4.5e-11 71.6 102 40.2
Migut.A00659 Erythranthe guttata HOM05D000828 ORTHO05D000623 4.5e-11 71.6 104 42.3
FAN19G2220 Fragaria x ananassa HOM05D000828 ORTHO05D000623 4.5e-11 71.6 91 47.3
Migut.N03276 Erythranthe guttata HOM05D000828 ORTHO05D000623 1.3e-10 70.1 104 46.2
HPP92_012046 Vanilla planifolia HOM05D000828 ORTHO05D000623 2.3e-10 69.3 98 43.9
Thecc.01G141400 Theobroma cacao HOM05D000828 ORTHO05D000623 5.0e-10 68.2 85 51.8
Sed0025862 Sechium edule HOM05D000828 ORTHO05D000623 6.6e-10 67.8 104 38.5
ATR0012G056 Amborella trichopoda HOM05D000828 ORTHO05D000623 3.3e-09 65.5 105 41.0
Prupe.4G062700 Prunus persica HOM05D000828 ORTHO05D000623 1.4e-07 60.1 106 34.9
ClCG03G007610 Citrullus lanatus HOM05D000828 ORTHO05D000623 1.8e-07 59.7 101 38.6
Dinv30331 Davidia involucrata HOM05D000828 ORTHO05D000623 2.3e-07 59.3 68 48.5
MBI07_g09557_MAGBIO Magnolia biondii HOM05D000828 ORTHO05D000623 3.0e-07 58.9 98 36.7
Glyma.15G083900 Glycine max HOM05D000828 ORTHO05D000623 1.5e-06 56.6 111 34.2
Lalb_Chr18g0054581 Lupinus albus HOM05D000828 ORTHO05D000623 2.0e-06 56.2 115 33.0
FAN25G1266 Fragaria x ananassa HOM05D000828 ORTHO05D000623 2.6e-06 55.8 101 35.6
CSS0046843 Camellia sinensis var. sinensis HOM05D000828 ORTHO05D000623 3.4e-06 55.5 100 31.0
Glyma.13G228600 Glycine max HOM05D000828 ORTHO05D000623 3.4e-06 55.5 97 37.1
arahy.Tifrunner.gnm1.ann1.DXWW21 Arachis hypogaea HOM05D000828 ORTHO05D000623 4.4e-06 55.1 94 31.9
CARHR225520 Cardamine hirsuta HOM05D000828 ORTHO05D000623 4.4e-06 55.1 82 39.0
FAN19G1830 Fragaria x ananassa HOM05D000828 ORTHO05D000623 4.4e-06 55.1 67 44.8
CSS0004670 Camellia sinensis var. sinensis HOM05D000828 ORTHO05D000623 7.5e-06 54.3 111 30.6
Sed0024596 Sechium edule HOM05D000828 ORTHO05D000623 7.5e-06 54.3 50 52.0
Actinidia12582 Actinidia chinensis HOM05D000828 ORTHO05D000623 9.8e-06 53.9 54 50.0
CiPaw.10G060100 Carya illinoinensis HOM05D000828 ORTHO05D000623 9.8e-06 53.9 101 34.7
Thecc.07G117500 Theobroma cacao HOM05D000828 ORTHO05D000623 9.8e-06 53.9 48 52.1


User provided reference genes

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