Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 3.2e-184 648.3 327 100.0
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 4.7e-135 485.0 327 75.5
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 7.5e-125 451.1 325 68.9
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 6.3e-124 448.0 327 68.5
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 3.5e-122 442.2 328 69.8
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 3.1e-118 429.1 325 64.6
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 1.5e-117 426.8 325 66.8
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 9.8e-117 424.1 325 64.6
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 9.8e-117 424.1 325 64.0
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 2.2e-116 422.9 337 62.3
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 3.7e-116 422.2 325 68.3
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.9e-116 421.8 327 64.2
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 6.4e-116 421.4 327 64.2
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.4e-115 420.2 327 63.9
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.4e-115 419.5 327 63.9
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 2.4e-115 419.5 304 71.1
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 7.0e-115 417.9 327 63.9
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 7.0e-115 417.9 327 63.9
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 9.2e-115 417.5 327 65.1
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.6e-114 416.8 334 65.9
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 2.0e-114 416.4 327 64.8
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 6.0e-114 414.8 327 64.8
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.8e-114 414.5 331 64.0
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.9e-113 412.1 339 63.7
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 6.6e-113 411.4 327 63.0
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.1e-112 410.6 333 64.6
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 2.5e-112 409.5 294 67.7
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 5.6e-112 408.3 329 63.2
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 9.5e-112 407.5 323 63.8
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.6e-111 405.6 328 64.3
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 3.6e-111 405.6 327 63.0
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.4e-110 403.7 327 63.3
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.3e-110 402.9 318 66.7
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 8.9e-110 401.0 328 63.7
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.5e-109 400.2 327 63.0
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.5e-109 400.2 331 61.0
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 7.5e-109 397.9 325 61.8
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 3.2e-107 392.5 328 62.8
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 4.1e-107 392.1 329 62.6
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 5.4e-107 391.7 326 62.6
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.6e-106 390.2 325 60.9
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 3.5e-106 389.0 327 62.4
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 4.6e-106 388.7 300 63.7
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 6.0e-106 388.3 326 62.9
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 7.8e-106 387.9 332 60.2
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.0e-105 387.5 326 61.7
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.3e-105 387.1 327 62.4
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 6.6e-105 384.8 305 65.2
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 6.6e-105 384.8 324 61.7
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 8.6e-105 384.4 329 61.4
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.1e-104 384.0 294 70.1
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 3.3e-104 382.5 328 62.2
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 6.2e-103 378.3 329 62.0
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 1.4e-102 377.1 327 61.5
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 6.8e-102 374.8 326 61.0
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.0e-101 373.2 330 57.6
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 4.1e-99 365.5 327 57.8
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 1.3e-97 360.5 325 59.1
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 5.1e-97 358.6 249 75.5
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 5.1e-97 358.6 333 59.5
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 4.3e-96 355.5 326 57.7
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 4.3e-96 355.5 278 64.4
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 5.6e-96 355.1 326 57.7
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 9.6e-96 354.4 344 56.1
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 6.2e-95 351.7 327 57.5
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 1.4e-94 350.5 316 58.9
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.4e-94 350.5 327 56.6
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.8e-94 350.1 328 54.6
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 6.8e-94 348.2 319 57.7
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.2e-93 347.4 329 57.4
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.5e-93 347.1 331 56.5
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 9.9e-93 344.4 354 53.7
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.7e-92 343.6 326 55.2
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.7e-92 343.6 314 57.6
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.7e-92 343.6 295 61.0
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 2.9e-92 342.8 294 59.5
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 3.8e-92 342.4 331 56.5
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 5.4e-91 338.6 334 55.7
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.6e-90 337.0 325 54.2
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.6e-90 337.0 328 53.7
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 4.6e-90 335.5 297 58.2
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.3e-89 334.0 326 54.9
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 8.7e-89 331.3 334 52.7
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.6e-87 325.9 329 54.7
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 2.0e-85 320.1 294 56.1
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.6e-85 319.7 292 57.5
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 4.9e-84 315.5 330 53.9
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.1e-83 314.3 295 57.6
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 4.2e-83 312.4 344 53.2
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 5.4e-83 312.0 344 52.9
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 6.0e-82 308.5 275 60.0
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 7.8e-82 308.1 344 52.9
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.0e-81 307.8 328 52.1
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.7e-81 307.0 325 53.5
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 4.3e-80 302.4 314 53.2
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 9.6e-80 301.2 213 69.0
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.1e-78 297.7 358 50.3
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 1.5e-77 293.9 321 52.0
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 6.4e-76 288.5 237 60.8
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 1.1e-75 287.7 352 45.7
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.9e-75 287.0 316 51.9
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 6.0e-74 282.0 357 48.2
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.5e-72 277.3 280 51.4
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 5.8e-69 265.4 327 47.7
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 1.4e-67 260.8 272 47.8
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 5.5e-67 258.8 257 56.0
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 5.5e-67 258.8 327 48.0
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.8e-65 253.8 279 52.7
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 2.3e-65 253.4 275 49.1
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.1e-64 251.1 235 57.4
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.1e-64 251.1 235 57.4
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.3e-63 247.7 292 47.3
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.8e-63 246.5 218 59.2
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 8.2e-63 245.0 227 59.5
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 4.0e-62 242.7 243 48.6
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 3.4e-61 239.6 325 43.1
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 4.5e-61 239.2 174 69.0
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 5.1e-57 225.7 266 44.7
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 6.9e-54 215.3 208 56.7
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.5e-53 212.6 248 49.6
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 4.3e-48 196.1 248 46.0
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 5.7e-48 195.7 237 45.6
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.4e-46 191.0 213 52.1
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.4e-46 191.0 177 55.4
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.2e-45 188.0 122 69.7
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.5e-45 187.6 276 41.7
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 3.8e-44 183.0 150 60.7
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.0e-41 174.9 155 55.5
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 6.7e-41 172.2 138 63.8
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 2.4e-38 163.7 159 55.3
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.6e-37 160.2 181 48.1
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.1e-35 154.8 250 37.6
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-33 148.3 148 49.3
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.3e-33 147.1 284 34.2
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.4e-32 142.9 200 44.0
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.4e-32 142.9 154 53.9
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 1.8e-30 137.5 158 48.7
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 8.0e-26 122.1 79 74.7
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 1.8e-22 110.9 153 43.8
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.0e-17 95.1 184 35.9
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 2.6e-16 90.5 174 28.7
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.7e-15 87.8 82 58.5
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 3.3e-11 73.6 78 53.8
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 4.7e-10 69.7 49 67.3
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 1.8e-06 57.8 31 80.6


User provided reference genes

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