Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.6e-106 387.9 193 100.0
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.1e-81 304.7 152 98.7
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.1e-81 304.7 152 98.7
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 6.7e-81 304.3 152 98.7
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.2e-75 285.4 152 90.1
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 5.7e-72 274.6 153 85.0
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 7.4e-72 274.2 152 86.2
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 2.2e-71 272.7 152 84.9
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.8e-71 271.6 152 86.8
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 8.2e-71 270.8 152 84.2
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.4e-70 269.2 152 85.5
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.1e-70 268.9 151 86.8
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.6e-69 265.8 155 83.9
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 3.4e-69 265.4 160 79.4
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 3.4e-69 265.4 152 82.2
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 7.7e-69 264.2 152 79.6
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.3e-68 263.5 152 78.9
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.3e-68 263.5 152 78.9
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.9e-68 262.3 159 81.8
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 2.9e-68 262.3 155 79.4
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 2.9e-68 262.3 152 78.3
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.8e-68 261.9 159 74.8
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 5.0e-68 261.5 148 82.4
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 8.5e-68 260.8 182 71.4
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 1.1e-67 260.4 149 79.2
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 1.1e-67 260.4 156 75.0
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.4e-67 260.0 152 82.2
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 1.9e-67 259.6 152 80.3
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.2e-67 258.8 148 81.1
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 3.2e-67 258.8 152 82.2
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 3.2e-67 258.8 152 77.0
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 4.2e-67 258.5 152 78.9
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 5.5e-67 258.1 148 81.1
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.2e-67 257.7 148 81.1
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 7.2e-67 257.7 152 79.6
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 9.4e-67 257.3 152 80.3
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 1.2e-66 256.9 152 78.3
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.2e-66 256.9 152 78.9
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 1.6e-66 256.5 152 80.9
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 2.1e-66 256.1 156 78.8
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 2.1e-66 256.1 152 78.9
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 2.1e-66 256.1 152 77.0
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 2.7e-66 255.8 159 78.0
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 6.1e-66 254.6 152 75.7
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 6.1e-66 254.6 152 75.7
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.0e-65 253.8 152 78.9
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.4e-65 253.4 156 77.6
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.8e-65 253.1 152 78.9
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 2.3e-65 252.7 156 76.3
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 3.9e-65 251.9 149 75.8
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 3.9e-65 251.9 156 77.6
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 3.9e-65 251.9 149 79.9
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.1e-65 251.5 154 76.0
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 6.7e-65 251.1 152 78.9
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 6.7e-65 251.1 159 73.6
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 8.8e-65 250.8 150 76.7
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 1.1e-64 250.4 156 75.6
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 1.5e-64 250.0 149 76.5
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 2.0e-64 249.6 149 76.5
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 2.0e-64 249.6 152 78.3
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.0e-64 249.6 152 79.6
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 2.6e-64 249.2 150 75.3
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 3.3e-64 248.8 152 77.0
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 3.3e-64 248.8 152 77.0
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 3.3e-64 248.8 151 74.8
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 3.3e-64 248.8 156 75.0
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 3.3e-64 248.8 152 76.3
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.4e-64 248.4 152 78.9
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 7.4e-64 247.7 156 75.0
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 7.4e-64 247.7 149 74.5
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 7.4e-64 247.7 152 75.0
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 9.7e-64 247.3 159 74.8
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 1.3e-63 246.9 152 74.3
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 1.3e-63 246.9 152 75.7
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 1.3e-63 246.9 149 76.5
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 1.3e-63 246.9 152 77.6
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 1.7e-63 246.5 152 77.0
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 1.7e-63 246.5 152 78.3
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 2.8e-63 245.7 153 75.8
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 3.7e-63 245.4 153 75.8
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 3.7e-63 245.4 152 75.7
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 6.3e-63 244.6 152 76.3
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 8.2e-63 244.2 152 75.7
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.1e-62 243.8 149 73.2
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 1.4e-62 243.4 147 77.6
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.8e-62 243.0 152 75.7
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 1.8e-62 243.0 150 76.0
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 3.1e-62 242.3 149 76.5
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 4.1e-62 241.9 150 73.3
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 4.1e-62 241.9 176 69.3
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.2e-61 240.4 152 74.3
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 1.5e-61 240.0 156 73.1
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 1.5e-61 240.0 169 70.4
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 3.5e-61 238.8 152 74.3
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 4.5e-61 238.4 156 73.1
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 5.9e-61 238.0 152 73.7
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 7.7e-61 237.7 152 73.0
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 6.5e-60 234.6 156 70.5
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 3.2e-59 232.3 168 67.3
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 7.2e-59 231.1 143 74.8
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 6.1e-58 228.0 149 70.5
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.0e-57 227.3 148 68.9
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 5.2e-57 224.9 122 88.5
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 1.5e-56 223.4 134 76.9
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 2.2e-55 219.5 159 62.9
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 2.2e-55 219.5 122 83.6
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 2.8e-55 219.2 144 70.1
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 3.1e-54 215.7 160 62.5
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 7.0e-54 214.5 122 80.3
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 2.2e-52 209.5 125 84.0
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 6.5e-52 208.0 122 77.9
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 1.0e-49 200.7 148 60.8
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 4.4e-48 195.3 146 56.2
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 1.2e-45 187.2 174 50.0
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 4.5e-45 185.3 135 68.1
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 7.7e-45 184.5 142 60.6
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 2.9e-44 182.6 145 57.9
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 3.8e-44 182.2 147 63.9
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 3.2e-43 179.1 152 59.2
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.4e-40 169.1 151 60.9
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 1.7e-36 156.8 181 51.9
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 8.6e-36 154.5 94 79.8
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.5e-35 153.7 92 81.5
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 5.5e-35 151.8 91 76.9
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 6.8e-33 144.8 121 63.6
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 1.5e-32 143.7 155 42.6
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.0e-28 128.6 114 57.0
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.1e-26 123.2 93 60.2
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 2.8e-26 122.9 66 81.8
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 3.6e-26 122.5 142 43.0
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.4e-25 120.6 70 81.4
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 7.5e-24 114.8 95 61.1
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 8.3e-23 111.3 71 74.6
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 1.9e-22 110.2 150 42.0
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 7.3e-19 98.2 59 72.9
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 8.3e-15 84.7 62 64.5
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 5.4e-14 82.0 146 34.9
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 4.3e-11 72.4 50 70.0
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 2.8e-10 69.7 53 62.3
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 4.7e-10 68.9 59 59.3
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 1.8e-09 67.0 43 65.1


User provided reference genes

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