Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 5.5e-141 504.6 312 100.0
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 3.8e-78 295.8 310 63.5
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 9.5e-77 291.2 309 62.8
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 4.7e-68 262.3 305 56.4
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 6.8e-67 258.5 314 56.4
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 6.8e-67 258.5 305 55.7
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 1.5e-66 257.3 282 57.1
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 2.6e-66 256.5 306 55.2
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 2.6e-66 256.5 306 55.2
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 5.8e-66 255.4 306 55.2
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 1.7e-65 253.8 314 56.1
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.7e-65 253.8 322 53.1
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.9e-65 253.1 314 55.1
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 3.7e-65 252.7 309 60.8
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 1.4e-64 250.8 314 56.4
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.2e-63 247.7 305 59.3
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 1.6e-63 247.3 307 57.7
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 2.0e-63 246.9 264 61.0
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 1.5e-61 240.7 305 54.1
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 1.9e-61 240.4 306 55.9
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 3.3e-61 239.6 309 54.4
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 4.3e-61 239.2 307 52.1
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 1.6e-60 237.3 309 56.3
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 2.1e-60 236.9 311 54.3
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.8e-60 236.5 307 52.4
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 3.6e-60 236.1 273 57.5
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 4.7e-60 235.7 314 54.1
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 4.7e-60 235.7 305 55.4
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 8.1e-60 235.0 307 51.8
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 1.4e-59 234.2 287 55.1
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 2.3e-59 233.4 314 58.6
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 4.0e-59 232.6 307 52.4
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 4.0e-59 232.6 314 54.8
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 5.2e-59 232.3 263 57.8
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 5.2e-59 232.3 306 56.5
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 6.8e-59 231.9 314 52.9
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.2e-58 231.1 303 51.8
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.6e-58 229.9 309 52.8
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 3.4e-58 229.6 314 54.5
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 4.4e-58 229.2 300 51.7
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 5.8e-58 228.8 313 55.0
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 9.8e-58 228.0 309 59.9
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 1.3e-57 227.6 316 55.4
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.7e-57 227.3 306 54.6
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.7e-57 227.3 306 54.6
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 2.2e-57 226.9 309 55.7
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.9e-57 226.5 288 53.8
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 1.9e-56 223.8 308 51.9
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.9e-56 223.8 305 52.5
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 2.4e-56 223.4 309 54.0
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 3.2e-56 223.0 303 49.8
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 7.1e-56 221.9 305 52.8
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 2.1e-55 220.3 278 53.2
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 4.6e-55 219.2 310 51.0
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 7.8e-55 218.4 310 52.3
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.3e-54 217.6 303 49.2
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 2.3e-54 216.9 310 50.0
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 6.6e-54 215.3 310 50.3
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.1e-53 214.5 295 51.5
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.1e-53 214.5 306 53.6
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 1.5e-53 214.2 307 49.2
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.5e-53 214.2 276 48.9
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.9e-53 213.8 271 53.5
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 1.9e-53 213.8 322 52.8
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.9e-53 213.8 316 47.5
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 7.3e-53 211.8 265 60.8
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.1e-52 210.3 304 49.0
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 2.1e-52 210.3 308 50.6
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 2.1e-52 210.3 267 52.8
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 4.7e-52 209.1 309 49.8
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 8.1e-52 208.4 258 51.2
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 1.1e-51 208.0 309 56.6
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 1.1e-51 208.0 309 56.6
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 1.1e-51 208.0 311 50.8
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 1.4e-51 207.6 309 49.2
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.4e-51 207.6 297 48.1
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.8e-51 207.2 308 48.1
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 3.1e-51 206.5 413 43.8
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 4.0e-51 206.1 313 48.2
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 4.0e-51 206.1 262 51.9
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 6.8e-51 205.3 311 48.6
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 2.6e-50 203.4 316 53.8
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 7.6e-50 201.8 310 45.8
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 1.7e-49 200.7 289 49.1
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 1.7e-49 200.7 333 46.2
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 2.9e-49 199.9 318 51.6
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 4.9e-49 199.1 305 50.5
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 8.4e-49 198.4 309 50.8
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 1.1e-48 198.0 281 54.8
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.9e-48 197.2 313 46.6
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 9.2e-48 194.9 270 50.7
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 2.7e-47 193.4 309 46.6
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 3.5e-47 193.0 305 47.9
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 4.6e-47 192.6 303 46.5
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 3.0e-46 189.9 274 58.4
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 5.1e-46 189.1 261 51.3
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 1.5e-45 187.6 280 44.3
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 1.9e-45 187.2 333 45.0
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 2.5e-45 186.8 303 45.9
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 7.3e-45 185.3 318 43.1
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-44 184.5 306 48.4
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 2.1e-44 183.7 307 47.2
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 3.6e-44 183.0 297 47.5
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 8.1e-44 181.8 240 54.2
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-40 171.4 310 49.7
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.1e-40 171.4 265 52.5
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 4.2e-40 169.5 204 58.3
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 5.4e-40 169.1 305 51.1
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 5.4e-40 169.1 295 47.1
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 2.7e-39 166.8 305 42.3
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 3.5e-39 166.4 303 51.2
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 1.0e-38 164.9 312 45.5
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 1.7e-38 164.1 262 48.9
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 1.1e-37 161.4 304 38.8
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 1.5e-37 161.0 319 48.3
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 4.3e-37 159.5 299 43.5
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 6.2e-36 155.6 309 47.9
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.6e-31 141.0 308 41.2
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 1.0e-30 138.3 273 36.3
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 2.3e-30 137.1 294 32.0
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 3.0e-30 136.7 247 41.3
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 1.1e-29 134.8 165 63.0
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 2.1e-28 130.6 243 38.7
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 1.1e-27 128.3 283 39.6
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 1.8e-27 127.5 273 35.2
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 6.9e-27 125.6 288 31.9
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 1.2e-26 124.8 256 37.1
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 1.5e-26 124.4 151 63.6
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 3.2e-24 116.7 82 70.7
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 7.1e-24 115.5 203 41.9
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 6.0e-23 112.5 200 44.5
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 1.6e-20 104.4 70 75.7
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 1.6e-20 104.4 163 43.6
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.8e-20 103.6 299 30.1
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 2.4e-19 100.5 269 38.7
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 4.8e-12 76.3 57 64.9
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 3.4e-10 70.1 62 56.5
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 7.6e-10 68.9 265 28.7
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 3.8e-09 66.6 92 47.8
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 5.0e-09 66.2 76 46.1
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 5.5e-08 62.8 115 40.0
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 3.9e-06 56.6 74 52.7


User provided reference genes

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