Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.4e-25 116.7 53 100.0
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-19 99.0 46 97.8
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.5e-19 97.1 46 95.7
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.5e-19 97.1 46 95.7
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.5e-19 97.1 46 95.7
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.4e-18 93.2 46 93.5
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.1e-12 74.3 35 94.3
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 4.0e-12 73.9 35 91.4
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 9.0e-12 72.8 35 88.6
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 9.0e-12 72.8 35 88.6
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.2e-11 72.4 35 91.4
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.2e-11 72.4 35 91.4
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.5e-11 72.0 35 91.4
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.5e-11 72.0 35 91.4
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 1.5e-11 72.0 36 86.1
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.5e-11 72.0 35 91.4
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.0e-11 71.6 35 88.6
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.0e-11 71.6 35 88.6
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.0e-11 71.6 35 88.6
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.0e-11 71.6 35 88.6
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 2.0e-11 71.6 35 88.6
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 2.0e-11 71.6 35 88.6
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 2.0e-11 71.6 35 88.6
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 2.0e-11 71.6 35 88.6
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 2.0e-11 71.6 35 88.6
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 2.6e-11 71.2 35 88.6
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 3.4e-11 70.9 35 88.6
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 4.5e-11 70.5 35 88.6
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 5.8e-11 70.1 35 88.6
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 5.8e-11 70.1 35 88.6
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 85.7
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 85.7
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 85.7
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 5.8e-11 70.1 35 88.6
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 5.8e-11 70.1 35 88.6
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 5.8e-11 70.1 35 88.6
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 7.6e-11 69.7 35 85.7
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 9.9e-11 69.3 35 85.7
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 9.9e-11 69.3 35 82.9
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 9.9e-11 69.3 35 85.7
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 9.9e-11 69.3 35 85.7
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 9.9e-11 69.3 35 82.9
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 1.3e-10 68.9 35 88.6
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.3e-10 68.9 35 85.7
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 85.7
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 82.9
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 82.9
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 82.9
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 82.9
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 82.9
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 82.9
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 82.9
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 85.7
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 82.9
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 85.7
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 82.9
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 1.7e-10 68.6 35 82.9
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 2.2e-10 68.2 35 85.7
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 2.2e-10 68.2 35 85.7
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 2.2e-10 68.2 34 88.2
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 2.9e-10 67.8 35 82.9
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 4.9e-10 67.0 35 85.7
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 4.9e-10 67.0 35 82.9
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 4.9e-10 67.0 35 80.0
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 4.9e-10 67.0 35 80.0
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 4.9e-10 67.0 35 85.7
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 6.4e-10 66.6 35 85.7
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 6.4e-10 66.6 35 85.7
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 6.4e-10 66.6 35 82.9
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 6.4e-10 66.6 35 85.7
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 6.4e-10 66.6 35 85.7
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 6.4e-10 66.6 35 82.9
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 8.4e-10 66.2 35 82.9
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 8.4e-10 66.2 35 82.9
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 8.4e-10 66.2 35 82.9
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 8.4e-10 66.2 35 82.9
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 8.4e-10 66.2 35 82.9
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 8.4e-10 66.2 35 82.9
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 8.4e-10 66.2 35 82.9
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 8.4e-10 66.2 35 82.9
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 1.1e-09 65.9 35 82.9
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 1.1e-09 65.9 35 82.9
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 1.4e-09 65.5 35 82.9
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.4e-09 64.7 35 77.1
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.4e-09 64.7 35 77.1
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.4e-09 64.7 35 77.1
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 2.4e-09 64.7 35 80.0
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 3.2e-09 64.3 35 77.1
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 3.2e-09 64.3 35 77.1
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 5.5e-09 63.5 35 77.1
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 5.5e-09 63.5 35 77.1
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 7.1e-09 63.2 35 74.3
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 7.1e-09 63.2 31 87.1
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 7.1e-09 63.2 35 80.0
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 9.3e-09 62.8 30 86.7
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 9.3e-09 62.8 35 80.0
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 1.2e-08 62.4 35 74.3
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 1.2e-08 62.4 35 74.3
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.6e-08 62.0 41 70.7
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 2.7e-08 61.2 34 79.4
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 1.3e-07 58.9 34 70.6
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 1.3e-07 58.9 35 77.1
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 3.0e-07 57.8 28 89.3
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 3.9e-07 57.4 35 65.7


User provided reference genes

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